Forum:list of bioinformatics tools in cancer genomics
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7 weeks ago
Bogdan ★ 1.4k

Dear all,

Would you please let me know if you came across any website that (more or less) comprehensively lists the bioinformatics tools that are currently used in cancer genomics.

For example :

<> "mutations" : GATK, Mutect2, Varscan2, Strelka, etc ..

<> "copy number alterations" : TitanCNA, FACETS, Sequenza, etc ..

<> "structural variants" : Delly, Lumpy, Manta, etc ..

<> "mutation signatures" : MutationPatterns

<> "microsatellite Instability" : Mantis, MSIsensor, etc ..

Possibly, organized in the same format, as provided for databases: https://academic.oup.com/nar/article/50/D1/D1/6495890

Thank you,

Bogdan

mutations CNA cancer genomics LOH • 255 views
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