User: mohammadhassanj

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1 week, 3 days ago
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2 years ago
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Posts by mohammadhassanj

<prev • 11 results • page 1 of 2 • next >
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Comment: C: how to use regular expression to grasp information before "GO:" or "#N/A"
... for line in rawdata: value1 = re.search("GO.*",line) value2 = re.search("#N/A.*",line) if value1: print(value1.group(0)) if value2: print(value2.group(0)) ...
written 4 months ago by mohammadhassanj50
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Comment: C: Trying to install RSeQC-python package
... Hi, Have you seen this https://stackoverflow.com/questions/40424097/file-not-found-error-when-pip-installing-python-lzo ...
written 4 months ago by mohammadhassanj50
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Comment: C: python and bidirectional hit
... The print function has an argument that you can use print("something", end = "") end can be any char or scape char ...
written 5 months ago by mohammadhassanj50
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Answer: A: using parallel program
... I think the following links will be useful to you https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/ https://www.gnu.org/software/parallel/parallel_tutorial.html ...
written 8 months ago by mohammadhassanj50
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Answer: A: How to read two non-consecutive lines in a file once in python
... """if you had a small file you can use readlines method and using some variables to solve it but you have a huge file and a limited memory so below script will your problem somewhat you can improve it""" file = open("test.cpp") byte =0 while True: x = 1 line ...
written 9 months ago by mohammadhassanj50
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Answer: A: mirnas predicte mrna
... Hi, mirnet is a good predicted and validated mir-target interaction website, as well as there is a visualization module that draws mir-gene network for functional analysis [mirnet.ca][1] [1]: http://www.mirnet.ca ...
written 11 months ago by mohammadhassanj50
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Comment: C: The Biostar Handbook. A bioinformatics e-book for beginners.
... thank you for sharing your experience but I can't login to read the book!! Is biostar username and password valid? ...
written 11 months ago by mohammadhassanj50
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Answer: A: Convert article title to pubmed ID
... from lxml import etree from requests import get import sys import os url_for_get_id = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&field=title&term=\"{}\"" url_for_get_title = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db= ...
written 11 months ago by mohammadhassanj50
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Comment: C: how can I get supporting evidence for each transcript in Ensembl?
... Hi, Among the following "analysis_id" list in the "dna_align_feature" table , which one of them are considered in calculation of number of exon supporting features? {'14','20','8165','8356','8357','8361','8364','8366','8372', '8373','8385','8416','8442','9'} for examlpe, greatest number of exon su ...
written 12 months ago by mohammadhassanj50
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Comment: C: how can I get supporting evidence for each transcript in Ensembl?
... Thanks, Can you tell me what's the relavant tables (supporting_evidence) name? ...
written 12 months ago by mohammadhassanj50

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