User: mohammadhassanj

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Posts by mohammadhassanj

<prev • 8 results • page 1 of 1 • next >
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Answer: A: using parallel program
... I think the following links will be useful to you https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/ https://www.gnu.org/software/parallel/parallel_tutorial.html ...
written 12 weeks ago by mohammadhassanj30
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Answer: A: How to read two non-consecutive lines in a file once in python
... """if you had a small file you can use readlines method and using some variables to solve it but you have a huge file and a limited memory so below script will your problem somewhat you can improve it""" file = open("test.cpp") byte =0 while True: x = 1 line ...
written 3 months ago by mohammadhassanj30
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Answer: A: mirnas predicte mrna
... Hi, mirnet is a good predicted and validated mir-target interaction website, as well as there is a visualization module that draws mir-gene network for functional analysis [mirnet.ca][1] [1]: http://www.mirnet.ca ...
written 5 months ago by mohammadhassanj30
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Comment: C: The Biostar Handbook. A bioinformatics e-book for beginners.
... thank you for sharing your experience but I can't login to read the book!! Is biostar username and password valid? ...
written 5 months ago by mohammadhassanj30
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Answer: A: Convert article title to pubmed ID
... from lxml import etree from requests import get import sys import os url_for_get_id = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&field=title&term=\"{}\"" url_for_get_title = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db= ...
written 5 months ago by mohammadhassanj30
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Comment: C: how can I get supporting evidence for each transcript in Ensembl?
... Hi, Among the following "analysis_id" list in the "dna_align_feature" table , which one of them are considered in calculation of number of exon supporting features? {'14','20','8165','8356','8357','8361','8364','8366','8372', '8373','8385','8416','8442','9'} for examlpe, greatest number of exon su ...
written 6 months ago by mohammadhassanj30
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Comment: C: how can I get supporting evidence for each transcript in Ensembl?
... Thanks, Can you tell me what's the relavant tables (supporting_evidence) name? ...
written 6 months ago by mohammadhassanj30
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how can I get supporting evidence for each transcript in Ensembl?
... Hi, Is there any way to get [supporting evidence][1] for each transcript in Ensembl? I can't find this in Biomart ? thanks [1]: http://www.ensembl.org/Help/View?id=145 ...
ensembl biomart supporting evidence written 6 months ago by mohammadhassanj30

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