User: mohammadhassanj

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Posts by mohammadhassanj

<prev • 16 results • page 1 of 2 • next >
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Answer: A: How to parse entries from a text file into a python script?
... import re taxids = re.sub("\n"," ",open(‘taxID.txt.txt’,‘r’).read()).split(" ") ...
written 5 months ago by mohammadhassanj70
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Comment: C: Convert article title to pubmed ID
... Hi, can I have your file to test the script? ...
written 7 months ago by mohammadhassanj70
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Comment: C: how to combine standard deviations and mean for each group?
... could you please explain more about this? how can I do that? ...
written 8 months ago by mohammadhassanj70
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Comment: C: how to combine standard deviations and mean for each group?
... Rows are microRNAs and in columns there are genes (gene set) that are targeted by each microRNA. Numbers each row are the number of databases that report the targeting of a particular gene by miRNA. My goal is to look at the microRNA that targets the gene's set. So it should have the highest average ...
written 8 months ago by mohammadhassanj70
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how to combine standard deviations and mean for each group?
... I have a table with 10000 rows, each row having 10 columns and their numbers vary from 0 to 80.Now, if I want to compare the mean of these rows.Maybe because of the largeness of one of the numbers in the row and the compensation of the smaller numbers of the same row, I can not make a fair compariso ...
R normalization written 8 months ago by mohammadhassanj70
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Comment: C: how to use regular expression to grasp information before "GO:" or "#N/A"
... for line in rawdata: value1 = re.search("GO.*",line) value2 = re.search("#N/A.*",line) if value1: print(value1.group(0)) if value2: print(value2.group(0)) ...
written 13 months ago by mohammadhassanj70
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Comment: C: Trying to install RSeQC-python package
... Hi, Have you seen this https://stackoverflow.com/questions/40424097/file-not-found-error-when-pip-installing-python-lzo ...
written 13 months ago by mohammadhassanj70
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Comment: C: python and bidirectional hit
... The print function has an argument that you can use print("something", end = "") end can be any char or scape char ...
written 14 months ago by mohammadhassanj70
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Answer: A: using parallel program
... I think the following links will be useful to you https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/ https://www.gnu.org/software/parallel/parallel_tutorial.html ...
written 18 months ago by mohammadhassanj70
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Answer: A: How to read two non-consecutive lines in a file once in python
... """if you had a small file you can use readlines method and using some variables to solve it but you have a huge file and a limited memory so below script will your problem somewhat you can improve it""" file = open("test.cpp") byte =0 while True: x = 1 line ...
written 18 months ago by mohammadhassanj70

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