User: maxime.policarpo

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40
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New User
Location:
France, Paris
Last seen:
1 day, 14 hours ago
Joined:
1 year, 12 months ago
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m***************@hotmail.fr

Posts by maxime.policarpo

<prev • 30 results • page 1 of 3 • next >
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Answer: A: tblastn multiple protein against db
... You can directly blast with your file containing multiple proteins as query : tblastn -query multiple_fasta_file.fasta -db genome ...
written 23 days ago by maxime.policarpo40
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Comment: C: Take out One percent of the tops of numbers from the column in the table
... Correct me if i am wrong : So you have a vector like this : (1,2,1,2,3,4,5,1,2,1,2,1,3,1,0,1,2,1,9,1,3) You want to create a subset of numbers that are higher than 3 and then, take one percent of this highest values among them? Then what i would to is to create the subset before taking the top 1% ...
written 28 days ago by maxime.policarpo40
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Answer: A: Take out One percent of the tops of numbers from the column in the table
... I think you could transform your column into a vector ( Z_W_FST=as.vector(table['Z_W_FST']) ) Then sort the vector and take the N top values you are interested in by sorting the vector -> sort(Z_W_FST, decreasing = TRUE)[1:N] So if you have 2000 values and you want one percent of the highest val ...
written 29 days ago by maxime.policarpo40
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Comment: C: Total CpG genome count
... Couldn't you also count GCs nucleotides as it will be a CpG on the reverse strand ? ...
written 5 months ago by maxime.policarpo40
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Comment: C: Blast or Blat for multiple sequence alignment to get each respective sequence lo
... Are you ok with using bash commands ? You should first start by installing blast on your computer (https://www.ncbi.nlm.nih.gov/books/NBK52640/) Then i have no idea if you want the top 20 possible location on a draft assembly genome or on a scaffold ? The problem is that blast results are divided ...
written 5 months ago by maxime.policarpo40 • updated 5 months ago by RamRS19k
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Comment: C: Blast or Blat for multiple sequence alignment to get each respective sequence lo
... I will focus on your problem in two days, i am kinda busy right now sorry :/ ...
written 5 months ago by maxime.policarpo40
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Comment: C: Get every variables sites between two aligned CDS sequences
... Perfect ! Thank you a lot * _ * ...
written 5 months ago by maxime.policarpo40
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Answer: A: Blast or Blat for multiple sequence alignment to get each respective sequence lo
... What is your final purpose ? I think you could use blast and only get the top 20 hits with the options `max_target_seqs` or `max_hsps`. ...
written 5 months ago by maxime.policarpo40 • updated 5 months ago by RamRS19k
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Comment: C: Get every variables sites between two aligned CDS sequences
... This would be great ! Maxime ...
written 5 months ago by maxime.policarpo40
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Comment: C: Get every variables sites between two aligned CDS sequences
... Yeah it would be more interesting in fact ! ...
written 5 months ago by maxime.policarpo40

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