User: maxime.policarpo

Reputation:
20
Status:
New User
Location:
France, Paris
Last seen:
17 hours ago
Joined:
1 year, 9 months ago
Email:
m***************@hotmail.fr

Posts by maxime.policarpo

<prev • 27 results • page 1 of 3 • next >
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Comment: C: Total CpG genome count
... Couldn't you also count GCs nucleotides as it will be a CpG on the reverse strand ? ...
written 12 weeks ago by maxime.policarpo20
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Comment: C: Blast or Blat for multiple sequence alignment to get each respective sequence lo
... Are you ok with using bash commands ? You should first start by installing blast on your computer (https://www.ncbi.nlm.nih.gov/books/NBK52640/) Then i have no idea if you want the top 20 possible location on a draft assembly genome or on a scaffold ? The problem is that blast results are divided ...
written 3 months ago by maxime.policarpo20 • updated 3 months ago by Ram17k
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Comment: C: Blast or Blat for multiple sequence alignment to get each respective sequence lo
... I will focus on your problem in two days, i am kinda busy right now sorry :/ ...
written 3 months ago by maxime.policarpo20
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Comment: C: Get every variables sites between two aligned CDS sequences
... Perfect ! Thank you a lot * _ * ...
written 3 months ago by maxime.policarpo20
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Answer: A: Blast or Blat for multiple sequence alignment to get each respective sequence lo
... What is your final purpose ? I think you could use blast and only get the top 20 hits with the options `max_target_seqs` or `max_hsps`. ...
written 3 months ago by maxime.policarpo20 • updated 3 months ago by Ram17k
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Comment: C: Get every variables sites between two aligned CDS sequences
... This would be great ! Maxime ...
written 3 months ago by maxime.policarpo20
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Comment: C: Get every variables sites between two aligned CDS sequences
... Yeah it would be more interesting in fact ! ...
written 3 months ago by maxime.policarpo20
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Comment: C: Get every variables sites between two aligned CDS sequences
... Yeah but i think it is what your script is doing no ? The line " if codon_s1.translate() == codon_s3.translate():" take the species3 as reference to detect the mutation effect if understood well ? ...
written 3 months ago by maxime.policarpo20
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Comment: C: Mya calculation for estimation of evolutionary time scale
... I am not sure to understand your question ? Do you want to calculate the age of divergence between two homologous sequences ? ...
written 3 months ago by maxime.policarpo20
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Comment: C: Get every variables sites between two aligned CDS sequences
... Thanks a lot for your help ! It is exactly what i was looking for ! ...
written 3 months ago by maxime.policarpo20

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