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Pairwise alignment and Ka/Ks computation
Pairwise-Alignment Genomics Ka-Ks
updated 18 months ago by 45k • written 18 months ago by ▴ 200
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0
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2.0k
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Comment: Comment: Recent alternative to LalnView
3.4 years ago by maxime.policarpo ▴ 200
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4
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2.0k
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Recent alternative to LalnView
Synteny Evolution Genome Alignment
3.4 years ago by maxime.policarpo ▴ 200
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1
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2.0k
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Answer: Answer: Recent alternative to LalnView
3.5 years ago by maxime.policarpo ▴ 200
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0
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1.8k
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Comment: Comment: Get the coverage after read alignment with bwa-mem2
3.6 years ago by maxime.policarpo ▴ 200
2
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3
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1.8k
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Get the coverage after read alignment with bwa-mem2
coverage alignment bwa-mem2 MAPQ
updated 3.6 years ago by ★ 2.1k • written 3.6 years ago by ▴ 200
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0
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1.3k
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Comment: Comment: Simulation - Evolution of the number of genes
3.6 years ago by maxime.policarpo ▴ 200
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2
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1.3k
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Simulation - Evolution of the number of genes
Evolution Phylogeny Gene repertoire Simulation
3.6 years ago by maxime.policarpo ▴ 200
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0
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684
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Interspecific read alignment - Eukaryote
illumina align genome reads organism
4.3 years ago by maxime.policarpo ▴ 200
3
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4
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2.2k
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Make tblastn run faster
blast tblastn genome software
updated 4.8 years ago by ▴ 30 • written 4.8 years ago by ▴ 200
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1
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2.2k
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Comment: C: Make tblastn run faster
4.8 years ago by maxime.policarpo ▴ 200
2
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1
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1.5k
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Answer: A: Alternative for phylosim in R
5.0 years ago by maxime.policarpo ▴ 200
6
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2
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4.4k
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Answer: A: Find overlapping blast hits and keep the highest evalue
updated 5.6 years ago by 154k • written 5.6 years ago by ▴ 200
12
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7
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4.4k
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Find overlapping blast hits and keep the highest evalue
blast genome R
5.6 years ago by maxime.policarpo ▴ 200
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0
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902
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Answer: A: tblastn extend beyond homology region
5.7 years ago by maxime.policarpo ▴ 200
0
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1
reply
1.3k
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ABC method - Number of individuals
DIYABC ABC Population Genetics
updated 2.4 years ago by • 0 • written 5.9 years ago by ▴ 200
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0
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7.0k
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Comment: C: Extract every CDS sequences from a VCF file
6.1 years ago by maxime.policarpo ▴ 200
7
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9
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7.0k
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Extract every CDS sequences from a VCF file
alignment VCF CDS
updated 6.1 years ago by 166k • written 6.2 years ago by ▴ 200
4
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0
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7.0k
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Answer: A: Extract every CDS sequences from a VCF file
6.2 years ago by maxime.policarpo ▴ 200
0
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0
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7.0k
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Comment: C: Extract every CDS sequences from a VCF file
6.2 years ago by maxime.policarpo ▴ 200
0
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0
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7.0k
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Comment: C: Extract every CDS sequences from a VCF file
6.2 years ago by maxime.policarpo ▴ 200
1
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4
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2.5k
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Plot multiple R empricial distributions with different X axis on the same plot
R distribution plot
updated 6.3 years ago by 45k • written 6.3 years ago by ▴ 200
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1
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2.5k
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Comment: C: Plot multiple R empricial distributions with different X axis on the same plot
6.3 years ago by maxime.policarpo ▴ 200
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0
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2.0k
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Answer: A: Predict frameshift mutation consequence tool - causing a premature stop codon do
6.3 years ago by maxime.policarpo ▴ 200
3
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0
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37k
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Answer: A: What is the difference between blastx and tblastn?
6.4 years ago by maxime.policarpo ▴ 200
0
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0
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1.9k
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Comment: C: Get the divergence between two species with a ref genome and reads
6.8 years ago by maxime.policarpo ▴ 200
0
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0
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1.9k
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Answer: A: Get the divergence between two species with a ref genome and reads
6.8 years ago by maxime.policarpo ▴ 200
1
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3
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1.9k
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Get the divergence between two species with a ref genome and reads
Assembly vcf mapping
6.8 years ago by maxime.policarpo ▴ 200
1
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1
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1.5k
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Answer: A: How can multiarray results have more than 1 gene name for each row?
6.8 years ago by maxime.policarpo ▴ 200
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0
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1.9k
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Comment: C: How to conclude in a significant decrease of coverage depth
6.9 years ago by maxime.policarpo ▴ 200
0
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4
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1.9k
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How to conclude in a significant decrease of coverage depth
alignment genome samtools next-gen coverage
updated 6.9 years ago by ★ 2.0k • written 6.9 years ago by ▴ 200
0
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1
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1.9k
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Comment: A: How to conclude in a significant decrease of coverage depth
6.9 years ago by maxime.policarpo ▴ 200
1
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0
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1.2k
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Answer: A: tblastn multiple protein against db
7.0 years ago by maxime.policarpo ▴ 200
1
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0
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2.3k
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Comment: C: Take out One percent of the tops of numbers from the column in the table
7.0 years ago by maxime.policarpo ▴ 200
0
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1
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2.3k
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Answer: A: Take out One percent of the tops of numbers from the column in the table
7.0 years ago by maxime.policarpo ▴ 200
0
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2
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4.7k
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Comment: C: Total CpG genome count
7.4 years ago by maxime.policarpo ▴ 200
0
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1
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3.2k
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Answer: A: Blast or Blat for multiple sequence alignment to get each respective sequence lo
updated 7.4 years ago by 45k • written 7.4 years ago by ▴ 200
0
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1
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3.2k
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Comment: C: Blast or Blat for multiple sequence alignment to get each respective sequence lo
updated 7.4 years ago by 45k • written 7.4 years ago by ▴ 200
0
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0
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3.2k
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Comment: C: Blast or Blat for multiple sequence alignment to get each respective sequence lo
7.4 years ago by maxime.policarpo ▴ 200
0
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0
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4.7k
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Comment: C: Get every variables sites between two aligned CDS sequences
7.4 years ago by maxime.policarpo ▴ 200
11
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22
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4.7k
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Get every variables sites between two aligned CDS sequences
alignment mutation synonymous non-synonymous
updated 7.4 years ago by 16k • written 7.4 years ago by ▴ 200
0
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0
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4.7k
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Comment: C: Get every variables sites between two aligned CDS sequences
7.4 years ago by maxime.policarpo ▴ 200
0
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1
reply
4.7k
views
Comment: C: Get every variables sites between two aligned CDS sequences
7.4 years ago by maxime.policarpo ▴ 200
0
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1
reply
4.7k
views
Comment: C: Get every variables sites between two aligned CDS sequences
7.4 years ago by maxime.policarpo ▴ 200
0
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0
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2.5k
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Comment: C: Mya calculation for estimation of evolutionary time scale
7.4 years ago by maxime.policarpo ▴ 200
0
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1
reply
4.7k
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Comment: C: Get every variables sites between two aligned CDS sequences
7.4 years ago by maxime.policarpo ▴ 200
0
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1
reply
4.7k
views
Comment: C: Get every variables sites between two aligned CDS sequences
updated 7.4 years ago by 16k • written 7.4 years ago by ▴ 200
0
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1
reply
4.7k
views
Comment: C: Get every variables sites between two aligned CDS sequences
7.4 years ago by maxime.policarpo ▴ 200
0
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1
reply
4.7k
views
Comment: C: Get every variables sites between two aligned CDS sequences
7.4 years ago by maxime.policarpo ▴ 200
0
votes
1
reply
4.7k
views
Comment: C: Get every variables sites between two aligned CDS sequences
7.4 years ago by maxime.policarpo ▴ 200
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