User: Pappu
Pappu • 1.8k
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Posts by Pappu
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... I want to filter out a list of protein sequences which have no homologs in bacteria. I am wondering if there is any easy way to do that. ...
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... I am looking for the human membrane protein gene symbols. I am wondering where can I download it. ...
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... I want to download gene expression data from ICGC. But most of the data seems to be from TCGA. ...
written 4 months ago by
Pappu • 1.8k
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... I am trying to make a data visualization web app in Python where users can visualize their gene expression mutation etc data sets and run basic analysis. I don't have experience in JavaScript. I am wondering if it would be possible to build such application or if their is any web framework tailored ...
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... I was trying to compare the log2 fold change in iTRAQ vs RNA-seq fpkm. Genes which have lfc>3 in RNA-seq, have lfc slightly higher than 1. I am wondering if it makes sense. ...
written 9 months ago by
Pappu • 1.8k
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1.8k
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... 1 fpkm is a standard filter. ...
written 10 months ago by
Pappu • 1.8k
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545
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... Check the ligand and receptor paper in nature communication from fantom consortium. ...
written 10 months ago by
Pappu • 1.8k
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557
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... I was trying to run sleuth for differential expression analysis. But I don't have the kallisto bootstrap values. I am wondering if it can run without bootstrap estimates. ...
written 10 months ago by
Pappu • 1.8k
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... I am looking for books on NGS techniques and basic biology for bioinformatics students from computer science background. ...
written 10 months ago by
Pappu • 1.8k
• updated
10 months ago by
KVC_bioinfo • 320
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Comment:
C: FANTOM gene expression data
... Yes averaging gives weird result as many transcript expression is zero. I just took a sum of transcripts expression for each gene. ...
written 10 months ago by
Pappu • 1.8k
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