User: Pappu
Pappu • 1.9k
- Reputation:
- 1,900
- Status:
- Trusted
- Location:
- Last seen:
- 1 week, 3 days ago
- Joined:
- 7 years, 11 months ago
- Email:
- p******@yahoo.com
Posts by Pappu
<prev
• 397 results •
page 1 of 40 •
next >
22
votes
5
answers
274
views
10 follow
5
answers
... I am wondering which productivity tools you use as a bioinformatician to improve the productivity of day to day work. For example using git, nextflow etc. ...
0
votes
1
answer
132
views
1
answers
... Human gencode outputs ~60k genes. ...
written 3 months ago by
Pappu • 1.9k
2
votes
1
answer
132
views
1
answer
... I am wondering if it is a standard practice to only include ~20k protein coding genes for DE and subsequent pathway analysis? ...
written 3 months ago by
Pappu • 1.9k
0
votes
0
answers
325
views
0
answers
Comment:
C: Gene function prediction
... Nothing came out from uniprot go annotation. ...
written 10 months ago by
Pappu • 1.9k
0
votes
0
answers
325
views
0
answers
... I am wondering if there is any good way to predict the function of a gene given the fact that hardly any literature exists on it. ...
written 10 months ago by
Pappu • 1.9k
0
votes
0
answers
198
views
0
answers
... I am looking for a list of differentially expressed (up and down) genes from all cmap perturbation experiments at clue.io I could only get a small fraction of those from the Enrichr website. I am wondering where can I get such list or how can I generate it from the raw data? ...
written 10 months ago by
Pappu • 1.9k
2
votes
0
answers
349
views
5 follow
0
answers
... I am wondering if the is any basic experimental methods book or review for bioinformaticians so that they can understand the presentations given by experimentalists. Such book should include what kind of experimental methods can be used to validate what kind of in-silico analysis results for example ...
written 10 months ago by
Pappu • 1.9k
3
votes
0
answers
597
views
0
answers
... I am wondering if there is any curated list of top cited bioinformatics papers during last 5 years.. ...
written 10 months ago by
Pappu • 1.9k
1
vote
1
answer
341
views
1
answer
... I am wondering if there is any pipeline which runs DESeq2, EdgeR etc DE analysis and GSEA, Pathway etc enrichment and other basic analysis in one go and make the results available by some kind of shiny or other web app. ...
4
votes
0
answers
230
views
0
answers
... I am wondering what is the effect of following filters before using fast quantifiers like salmon/kallisto:
1. Adapter trimming
2. Size selection
3. Quality filtering ...
Latest awards to Pappu
Popular Question
7 weeks ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
3 months ago,
created a question with more than 1,000 views.
For cancer genes database
Great Question
6 months ago,
created a question with more than 5,000 views.
For Easiest way to convert python script to web application
Popular Question
6 months ago,
created a question with more than 1,000 views.
For cancer genes database
Popular Question
6 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
9 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
9 months ago,
created a question with more than 1,000 views.
For cancer genes database
Popular Question
11 months ago,
created a question with more than 1,000 views.
For cancer genes database
Popular Question
11 months ago,
created a question with more than 1,000 views.
For cancer genes database
Popular Question
12 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
13 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
13 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Assembled TCGA dataset download
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
18 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
18 months ago,
created a question with more than 1,000 views.
For Finding overlap between BAM files or BAM and gff3 files
Popular Question
18 months ago,
created a question with more than 1,000 views.
For Assembled TCGA dataset download
Appreciated
20 months ago,
created a post with more than 5 votes.
For ipython notebooks on bioinformatics and genomics
Popular Question
20 months ago,
created a question with more than 1,000 views.
For Difference between MrBayes and Beast MCC tree
Popular Question
20 months ago,
created a question with more than 1,000 views.
For Finding overlap between BAM files or BAM and gff3 files
Popular Question
20 months ago,
created a question with more than 1,000 views.
For Assembled TCGA dataset download
Popular Question
20 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
20 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Great Question
20 months ago,
created a question with more than 5,000 views.
For Easiest way to convert python script to web application
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1602 users visited in the last hour