User: Pappu

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Pappu1.8k
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Posts by Pappu

<prev • 383 results • page 1 of 39 • next >
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Filtering a list of protein sequences with no homolog in bacteria
... I want to filter out a list of protein sequences which have no homologs in bacteria. I am wondering if there is any easy way to do that. ...
sequence written 6 weeks ago by Pappu1.8k
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human membrane protein gene symbols
... I am looking for the human membrane protein gene symbols. I am wondering where can I download it. ...
genome written 7 weeks ago by Pappu1.8k • updated 7 weeks ago by genomax48k
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icgc gene expression data
... I want to download gene expression data from ICGC. But most of the data seems to be from TCGA. ...
icgc written 8 weeks ago by Pappu1.8k
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Data Visualization Web App
... I am trying to make a data visualization web app in Python where users can visualize their gene expression mutation etc data sets and run basic analysis. I don't have experience in JavaScript. I am wondering if it would be possible to build such application or if their is any web framework tailored ...
rna-seq written 4 months ago by Pappu1.8k • updated 4 months ago by igor6.0k
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iTRAQ vs RNA-seq
... I was trying to compare the log2 fold change in iTRAQ vs RNA-seq fpkm. Genes which have lfc>3 in RNA-seq, have lfc slightly higher than 1. I am wondering if it makes sense. ...
rna-seq written 6 months ago by Pappu1.8k
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Comment: C: Filtering out low expressed genes in RNA-Seq data
... 1 fpkm is a standard filter. ...
written 8 months ago by Pappu1.8k
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Answer: A: Database of mouse ligand receptors
... Check the ligand and receptor paper in nature communication from fantom consortium. ...
written 8 months ago by Pappu1.8k
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sleuth differential expression without bootstrap
... I was trying to run sleuth for differential expression analysis. But I don't have the kallisto bootstrap values. I am wondering if it can run without bootstrap estimates. ...
rna-seq written 8 months ago by Pappu1.8k
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Genomics book for a computer scientist
... I am looking for books on NGS techniques and basic biology for bioinformatics students from computer science background. ...
chip-seq rna-seq written 8 months ago by Pappu1.8k • updated 8 months ago by KVC_bioinfo310
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Comment: C: FANTOM gene expression data
... Yes averaging gives weird result as many transcript expression is zero. I just took a sum of transcripts expression for each gene. ...
written 8 months ago by Pappu1.8k

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