User: Pappu
Pappu • 1.8k
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Posts by Pappu
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7 follow
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... I got a list of few hundred genes after runnis standard Deseq2 analysis. I am wondering how to list a few genes to focus on based pathway enrichment and other analysis. I am also looking for suitable tools for that. ...
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... I am looking for a awesome list of bioinformatics tools for cancer genomics. I am wondering if there is anything like that. ...
written 10 days ago by
Pappu • 1.8k
• updated
10 days ago by
Kevin Blighe • 1.2k
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129
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... I know about IPA but that's not free. ...
written 10 days ago by
Pappu • 1.8k
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129
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... I am wondering if there is any free tool for that. Reactome does not seem to have any option to enter fold change data. ...
written 11 days ago by
Pappu • 1.8k
3
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3
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237
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6 follow
3
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... I am looking for a summary list of most popular methods or algorithms (NOT a list of 1000+ methods) for ngs data analysis like gatk , gsea , bwa , rsem etc. I am wondering if there is any resource for that. ...
written 12 days ago by
Pappu • 1.8k
2
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answers
141
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... I am trying to convert transcript expression to gene expression. If I take mean, the results are skewed due to some low expressing transcripts. ...
written 13 days ago by
Pappu • 1.8k
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305
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... I am tyring to build a protein-protein interaction network combining KEGG, RNA-seq and other NGS data for cancer and Alzheimer's. I am wondering if there is any existing well established method (i.e. stochastic) for that. ...
written 11 months ago by
Pappu • 1.8k
3
votes
4
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501
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4
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... I am trying to find out which transcription factors or enhancers might be involved in regulation of expression of a set of genes in lung cancer. Let me know if there is any good resource for that. ...
written 11 months ago by
Pappu • 1.8k
• updated
10 months ago by
tangming2005 • 2.1k
3
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2
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1.2k
views
2
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... I am trying to find out transactional regulators, transcription factor binding sites, epigenetic modifications, enhancers, miRNA binding etc. of a gene say TP53 highly expressed in cancer. I am wondering if there is any good resource for that. ...
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275
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... I am trying to find find out which transcription factors, ncRNAs, epigenetic modifications, alternative splicing etc might influence the expression of a protein highly expressed in cancer. Is there any easy way to achieve the goal? ...
written 11 months ago by
Pappu • 1.8k
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