User: Pappu

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Pappu1.9k
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Posts by Pappu

<prev • 389 results • page 1 of 39 • next >
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DE and enrichment analysis pipeline
... I am wondering if there is any pipeline which runs DESeq2, EdgeR etc DE analysis and GSEA, Pathway etc enrichment and other basic analysis in one go and make the results available by some kind of shiny or other web app. ...
rna-seq written 11 days ago by Pappu1.9k • updated 11 days ago by EagleEye6.2k
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The effect of various filters on fast RNA-seq quantification
... I am wondering what is the effect of following filters before using fast quantifiers like salmon/kallisto: 1. Adapter trimming 2. Size selection 3. Quality filtering ...
rna-seq written 11 days ago by Pappu1.9k
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combining reads from multiple lanes for DE analysis
... I am tying to do differential expression (DE) analysis between different conditions. Now I have same samples sequenced at multiple lanes to improve coverage. I am wondering if it would be better to combine those reads from different lanes for quantification or quantify the reads separately before DE ...
rna-seq written 17 days ago by Pappu1.9k • updated 17 days ago by ATpoint13k
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Answer: A: Any database for downloading cancer cell-lines transcriptome differential expres
... Check out https://portals.broadinstitute.org/ccle ...
written 28 days ago by Pappu1.9k
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Answer: A: RNA-Seq database of cancer patients other than TCGA and ICGC?
... Check out http://www.cbioportal.org/ ...
written 28 days ago by Pappu1.9k
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Answer: A: Perturbation Cancer cell line data
... You can find it at https://clue.io/ ...
written 28 days ago by Pappu1.9k
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Filtering a list of protein sequences with no homolog in bacteria
... I want to filter out a list of protein sequences which have no homologs in bacteria. I am wondering if there is any easy way to do that. ...
sequence written 10 months ago by Pappu1.9k • updated 8 months ago by Biostar ♦♦ 20
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human membrane protein gene symbols
... I am looking for the human membrane protein gene symbols. I am wondering where can I download it. ...
genome written 10 months ago by Pappu1.9k • updated 10 months ago by genomax62k
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icgc gene expression data
... I want to download gene expression data from ICGC. But most of the data seems to be from TCGA. ...
icgc written 10 months ago by Pappu1.9k
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Data Visualization Web App
... I am trying to make a data visualization web app in Python where users can visualize their gene expression mutation etc data sets and run basic analysis. I don't have experience in JavaScript. I am wondering if it would be possible to build such application or if their is any web framework tailored ...
rna-seq written 13 months ago by Pappu1.9k • updated 13 months ago by igor7.3k

Latest awards to Pappu

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