User: Pappu
Pappu • 1.9k
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Posts by Pappu
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... I am wondering if there is any pipeline which runs DESeq2, EdgeR etc DE analysis and GSEA, Pathway etc enrichment and other basic analysis in one go and make the results available by some kind of shiny or other web app. ...
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... I am wondering what is the effect of following filters before using fast quantifiers like salmon/kallisto:
1. Adapter trimming
2. Size selection
3. Quality filtering ...
written 11 days ago by
Pappu • 1.9k
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1
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73
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... I am tying to do differential expression (DE) analysis between different conditions. Now I have same samples sequenced at multiple lanes to improve coverage. I am wondering if it would be better to combine those reads from different lanes for quantification or quantify the reads separately before DE ...
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... Check out https://portals.broadinstitute.org/ccle ...
written 28 days ago by
Pappu • 1.9k
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140
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... Check out http://www.cbioportal.org/ ...
written 28 days ago by
Pappu • 1.9k
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1
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154
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... You can find it at https://clue.io/ ...
written 28 days ago by
Pappu • 1.9k
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228
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... I want to filter out a list of protein sequences which have no homologs in bacteria. I am wondering if there is any easy way to do that. ...
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... I am looking for the human membrane protein gene symbols. I am wondering where can I download it. ...
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... I want to download gene expression data from ICGC. But most of the data seems to be from TCGA. ...
written 10 months ago by
Pappu • 1.9k
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580
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... I am trying to make a data visualization web app in Python where users can visualize their gene expression mutation etc data sets and run basic analysis. I don't have experience in JavaScript. I am wondering if it would be possible to build such application or if their is any web framework tailored ...
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