User: Pappu
Pappu • 1.9k
- Reputation:
- 1,880
- Status:
- Trusted
- Location:
- Last seen:
- 1 month, 4 weeks ago
- Joined:
- 7 years, 6 months ago
- Email:
- p******@yahoo.com
Posts by Pappu
<prev
• 394 results •
page 1 of 40 •
next >
0
votes
0
answers
238
views
0
answers
Comment:
C: Gene function prediction
... Nothing came out from uniprot go annotation. ...
written 5 months ago by
Pappu • 1.9k
0
votes
0
answers
238
views
0
answers
... I am wondering if there is any good way to predict the function of a gene given the fact that hardly any literature exists on it. ...
written 5 months ago by
Pappu • 1.9k
0
votes
0
answers
144
views
0
answers
... I am looking for a list of differentially expressed (up and down) genes from all cmap perturbation experiments at clue.io I could only get a small fraction of those from the Enrichr website. I am wondering where can I get such list or how can I generate it from the raw data? ...
written 5 months ago by
Pappu • 1.9k
2
votes
0
answers
269
views
5 follow
0
answers
... I am wondering if the is any basic experimental methods book or review for bioinformaticians so that they can understand the presentations given by experimentalists. Such book should include what kind of experimental methods can be used to validate what kind of in-silico analysis results for example ...
written 5 months ago by
Pappu • 1.9k
2
votes
0
answers
373
views
0
answers
... I am wondering if there is any curated list of top cited bioinformatics papers during last 5 years.. ...
written 5 months ago by
Pappu • 1.9k
1
vote
1
answer
243
views
1
answer
... I am wondering if there is any pipeline which runs DESeq2, EdgeR etc DE analysis and GSEA, Pathway etc enrichment and other basic analysis in one go and make the results available by some kind of shiny or other web app. ...
4
votes
0
answers
169
views
0
answers
... I am wondering what is the effect of following filters before using fast quantifiers like salmon/kallisto:
1. Adapter trimming
2. Size selection
3. Quality filtering ...
2
votes
1
answer
206
views
1
answer
... I am tying to do differential expression (DE) analysis between different conditions. Now I have same samples sequenced at multiple lanes to improve coverage. I am wondering if it would be better to combine those reads from different lanes for quantification or quantify the reads separately before DE ...
0
votes
2
answers
498
views
2
answers
... Check out https://portals.broadinstitute.org/ccle ...
written 7 months ago by
Pappu • 1.9k
0
votes
1
answer
487
views
1
answers
... Check out http://www.cbioportal.org/ ...
written 7 months ago by
Pappu • 1.9k
Latest awards to Pappu
Popular Question
4 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
4 months ago,
created a question with more than 1,000 views.
For cancer genes database
Popular Question
6 months ago,
created a question with more than 1,000 views.
For cancer genes database
Popular Question
6 months ago,
created a question with more than 1,000 views.
For cancer genes database
Popular Question
7 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
8 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
8 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
11 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
11 months ago,
created a question with more than 1,000 views.
For Assembled TCGA dataset download
Popular Question
11 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
13 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
13 months ago,
created a question with more than 1,000 views.
For Finding overlap between BAM files or BAM and gff3 files
Popular Question
13 months ago,
created a question with more than 1,000 views.
For Assembled TCGA dataset download
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Appreciated
15 months ago,
created a post with more than 5 votes.
For ipython notebooks on bioinformatics and genomics
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Difference between MrBayes and Beast MCC tree
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Finding overlap between BAM files or BAM and gff3 files
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Assembled TCGA dataset download
Great Question
15 months ago,
created a question with more than 5,000 views.
For Easiest way to convert python script to web application
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Popular Question
19 months ago,
created a question with more than 1,000 views.
For Estimating tumor purity from genomic data
Great Question
19 months ago,
created a question with more than 5,000 views.
For What Is The Difference Between Nr And Trembl Database?
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 534 users visited in the last hour