User: Susmita Mandal

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Bangalore
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1 year ago
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Posts by Susmita Mandal

<prev • 57 results • page 1 of 6 • next >
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Comment: C: scRNA-seq gene expression gradient onto tSNE plot
... I'm also trying to do the same thing. Can you please explain what that you have done here? ...
written 17 days ago by Susmita Mandal50
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Comment: C: STAR genome genrate taking long time and less thread.
... How big is the genome file? Exactly how much time STAR is taking? And what is the spec of your computer system? ...
written 10 weeks ago by Susmita Mandal50
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Comment: C: Allele Specific Expression Analysis
... Try HaplotypeCaller from GATK or VarScan2. ...
written 3 months ago by Susmita Mandal50
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Outliers in a boxplot: Necessary or not?
... What's the significance of outliers in a boxplot? Is it necessary to represent all the outliers in a boxplot? And if we can remove some of them, what are the criteria to either remove/keep them? Thanks Susmita ...
R rna-seq statistics written 3 months ago by Susmita Mandal50
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Comment: C: Moving average plot of gene expression ratio along the chromosome length
... Will it work if I want to check the ploidy of X chromsome in my samples. It's single cell RNA -Seq. ...
written 4 months ago by Susmita Mandal50
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Comment: C: Moving average plot of gene expression ratio along the chromosome length
... Can you explain this > averaging signal across samples and then making bigWigs of the ratio between each sample ...
written 5 months ago by Susmita Mandal50
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Moving average plot of gene expression ratio along the chromosome length
... Hello, I would like to see any chromosomal abberations in my samples and for that I want to plot moving average plots using expression values. Does anyone has any idea how to make one and what all tools I can use? Also how to find the positions of all the genes of a chromosome in humans? Any help w ...
gene R bioconductor next-gen rna-seq written 5 months ago by Susmita Mandal50
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Comment: C: Convert RefseqID to EntrezID
... Sorry I don't think it has Oryzias latipes ...
written 5 months ago by Susmita Mandal50
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Comment: A: Convert RefseqID to EntrezID
... https://www.biotools.fr/ Try this ...
written 5 months ago by Susmita Mandal50
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Comment: C: Getting only Indels and no SNPs after variant calling variant calling using Hapl
... I got SNPs after removing --outFilterMismatchNmax 0 in my mapping step! ...
written 5 months ago by Susmita Mandal50

Latest awards to Susmita Mandal

Popular Question 14 days ago, created a question with more than 1,000 views. For LiftOver a VCF file
Popular Question 4 weeks ago, created a question with more than 1,000 views. For LiftOver a VCF file
Popular Question 8 weeks ago, created a question with more than 1,000 views. For Allele Specific Expression Analysis

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