User: kmkdesilva

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kmkdesilva70
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Posts by kmkdesilva

<prev • 33 results • page 1 of 4 • next >
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Comment: C: How to use a single file as the input to MaSuRCA
... I am sorry for the confusion. I extracted the k-mers which are common among my genome of interest and several other genomes from closely related species. I am going to do a introgression study. ...
written 3 months ago by kmkdesilva70
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Comment: C: How to use a single file as the input to MaSuRCA
... Thank you very much for the clarification. I am new for this kind of analysis. I thought I should assemble the k-mers but now I understand that I need to find the corresponding reads. I highly appreciate if you can you please tell me how to go back to my data and find the corresponding reads. ...
written 3 months ago by kmkdesilva70
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How to use a single file as the input to MaSuRCA
... Hi everyone, I generated k-mers of a certain region of my genome of interest using Jellyfish software. Next I extracted certain k-mers from the dump.fa out put file. Now I need to assemble these k-mers into contigs. I read the documentation of MaSuRCA. It need to input files (ex: R1.fa and R2.fa). ...
assembly masurca input written 3 months ago by kmkdesilva70 • updated 3 months ago by shelkmike130
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How to understand data in custom track of ucsc genome browsers
... Hi everyone, I am looking at these custom tracks for whole genome sequence of a zebra on ucsc genome browser. It is mapped against horse reference genome. To my understanding the red track is the forward strand of zebra and blue track is the reverse strand of zebra. I want to get the paired end rea ...
genome custom track ucsc genome browser sequence written 3 months ago by kmkdesilva70
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Comment: C: Samtools give this error
... Yayy Thank you :D Does it give an error file even it runs correctly. ...
written 3.0 years ago by kmkdesilva70
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Comment: A: Samtools give this error
... Now I get this message in the error file. [bam_sort_core] merging from 303 files... And my bwaDie looks like this. total 224241792 -rw------- 1 kkdesi01 unixuser 138463147124 Jun 18 11:27 SRR1055837.sam -rw------- 1 kkdesi01 unixuser 51312872276 Jun 18 14:13 SRR1055837.bam - ...
written 3.0 years ago by kmkdesilva70 • updated 3.0 years ago by genomax68k
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Comment: C: Samtools give this error
... Yes I will start there. Thank you ...
written 3.0 years ago by kmkdesilva70
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Comment: C: Samtools give this error
... Thank you very much. It is running now. Will you please tell me how I can learn these things. Are there any books or tutorials? I really want to know these things better. Kalpi ...
written 3.0 years ago by kmkdesilva70
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Samtools give this error
... Hi all, I am trying to align some fastq files to a reference genome. I am very new to this work. When I run this code it gives the following error. I do not understand the reason for this. CODE -> /home/kkdesi01/samtools-1.3.1/samtools sort /scratch/global/kkdesi01/NGS_Class/animals/Twili ...
samtools written 3.0 years ago by kmkdesilva70
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Comment: C: Why 3' End Has A Lower Quality In Ngs Data
... Thank you very much. I got the point ...
written 5.4 years ago by kmkdesilva70

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Epic Question 2.9 years ago, created a question with more than 10,000 views. For Understanding Fastqc Output- Please Help
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Great Question 3.2 years ago, created a question with more than 5,000 views. For Understanding Fastqc Output- Please Help
Popular Question 3.7 years ago, created a question with more than 1,000 views. For Tools Used For Inferring Phylogenetic Relationships Using Next Generation Data Set
Popular Question 3.7 years ago, created a question with more than 1,000 views. For Converting .Bcl To Fasta
Popular Question 3.7 years ago, created a question with more than 1,000 views. For Bioinformatics Tools For Rad-Seq Data
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