User: prithvi.mastermind

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Posts by prithvi.mastermind

<prev • 27 results • page 1 of 3 • next >
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How to map Affymetrix IDs to Gene Symbols using hgu133a.db R package?
... if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("hgu133a.db") library(hgu133a.db) VB <- read.table(file = "PROBE.txt") x <- hgu133aSYMBOL(VB) MY Input Data: 218865_at 219574_at 210075_at ...
software error R written 4 weeks ago by prithvi.mastermind10 • updated 4 weeks ago by Kevin Blighe69k
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How to use pamr function in R?
... I'm using pamr function for training my model and thereby predicting on my test data. I have written the code but I'm not sure if my code is correct or not? Please give valuable feedback. library(pamr) data1 <- read.table("DISCOVERY_INPUT.txt",sep="\t") vecto <- scan("DISC_LABELS ...
software error R written 4 weeks ago by prithvi.mastermind10 • updated 4 days ago by _r_am32k
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Comment: C: How to increase font size in Funnel plot labels?
... Sure sir. Thanks for your helpful suggestions sir.. ...
written 5 weeks ago by prithvi.mastermind10
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Comment: C: How to draw a funnel plot in R using Plot_ly function?
... Thanks sir for your valuable help. ...
written 5 weeks ago by prithvi.mastermind10
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Comment: C: How to draw a Sankey plot with colored links?
... Thank you sir for your help. ...
written 5 weeks ago by prithvi.mastermind10
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How to increase font size in Funnel plot labels?
... I have added the command for increasing my font size, but I'm not able to see the bigger fonts. Please help My Code: library(plotly) t <- list(family = "sans serif", size = 100, color = 'black') fig <- plot_ly() fig <- fig %>% add_trace( type ...
software error R written 5 weeks ago by prithvi.mastermind10 • updated 5 weeks ago by Dunois490
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How to draw a funnel plot in R using Plot_ly function?
... How to draw a funnel plot using plotly package in R. My input data: Pathways Corr Glycolysis and Gluconeogenesis 0.455493708 Ethanol metabolism 0.429998123 Glycerophospholipid metabolism 0.421699867 ...
software error R written 5 weeks ago by prithvi.mastermind10 • updated 5 weeks ago by Dunois490
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Comment: C: How to draw a Sankey plot with colored links?
... Thanks Dunois for your valuable help. ...
written 6 weeks ago by prithvi.mastermind10
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How to draw a Sankey plot with colored links?
... I'm trying to draw a Sankey plot. But while plotting I'm getting some issues as some target and source nodes are missing and also the edges/links are not as same color as source node. My Sankey Code: library(tidyverse) library(viridis) library(patchwork) library(hrbrthemes) lib ...
software error R written 6 weeks ago by prithvi.mastermind10 • updated 6 weeks ago by Dunois490
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Pathifier Results not fully reproducible across TCGA and METABRIC
... My pathifier results of METABRIC (discovery + validation) and TCGA (batch corrected + normalized) are not reproducible to fully (They are reproducible to more or less 50%). My concern is whether this is due to the cross-platform variations like microarray-based (METABRIC) and RNA-Seq-based (TCGA) o ...
software error R rna-seq written 3 months ago by prithvi.mastermind10

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