User: prithvi.mastermind
prithvi.mastermind • 10
- Reputation:
- 10
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- New User
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- Last seen:
- 4 weeks, 1 day ago
- Joined:
- 8 months ago
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Posts by prithvi.mastermind
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... if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("hgu133a.db")
library(hgu133a.db)
VB <- read.table(file = "PROBE.txt")
x <- hgu133aSYMBOL(VB)
MY Input Data:
218865_at
219574_at
210075_at
...
written 4 weeks ago by
prithvi.mastermind • 10
• updated
4 weeks ago by
Kevin Blighe ♦ 69k
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... I'm using pamr function for training my model and thereby predicting on my test data. I have written the code but I'm not sure if my code is correct or not? Please give valuable feedback.
library(pamr)
data1 <- read.table("DISCOVERY_INPUT.txt",sep="\t")
vecto <- scan("DISC_LABELS ...
written 4 weeks ago by
prithvi.mastermind • 10
• updated
4 days ago by
_r_am ♦ 32k
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137
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... Sure sir. Thanks for your helpful suggestions sir.. ...
written 5 weeks ago by
prithvi.mastermind • 10
0
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1
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138
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1
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... Thanks sir for your valuable help. ...
written 5 weeks ago by
prithvi.mastermind • 10
0
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1
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170
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1
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... Thank you sir for your help. ...
written 5 weeks ago by
prithvi.mastermind • 10
1
vote
1
answer
137
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1
answer
... I have added the command for increasing my font size, but I'm not able to see the bigger fonts. Please help
My Code:
library(plotly)
t <- list(family = "sans serif", size = 100, color = 'black')
fig <- plot_ly()
fig <- fig %>%
add_trace(
type ...
written 5 weeks ago by
prithvi.mastermind • 10
• updated
5 weeks ago by
Dunois • 490
1
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1
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138
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... How to draw a funnel plot using plotly package in R.
My input data:
Pathways Corr
Glycolysis and Gluconeogenesis 0.455493708
Ethanol metabolism 0.429998123
Glycerophospholipid metabolism 0.421699867 ...
written 5 weeks ago by
prithvi.mastermind • 10
• updated
5 weeks ago by
Dunois • 490
1
vote
1
answer
170
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1
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... Thanks Dunois for your valuable help. ...
written 6 weeks ago by
prithvi.mastermind • 10
3
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1
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170
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1
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... I'm trying to draw a Sankey plot. But while plotting I'm getting some issues as some target and source nodes are missing and also the edges/links are not as same color as source node.
My Sankey Code:
library(tidyverse)
library(viridis)
library(patchwork)
library(hrbrthemes)
lib ...
written 6 weeks ago by
prithvi.mastermind • 10
• updated
6 weeks ago by
Dunois • 490
0
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0
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124
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... My pathifier results of METABRIC (discovery + validation) and TCGA (batch corrected + normalized) are not reproducible to fully (They are reproducible to more or less 50%).
My concern is whether this is due to the cross-platform variations like microarray-based (METABRIC) and RNA-Seq-based (TCGA) o ...
written 3 months ago by
prithvi.mastermind • 10
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