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written 23 hours ago by
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written 2 days ago by
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written 2 days ago by
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Ram
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written 3 days ago by
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4 days ago by
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updated 5 days ago by
Ram
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written 5 days ago by
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updated 8 days ago by
Ram
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written 8 days ago by
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updated 8 days ago by
Ram
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written 8 days ago by
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12 days ago by
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updated 14 days ago by
Ram
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written 14 days ago by
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updated 15 days ago by
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written 15 days ago by
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16 days ago by
Transmitting Science communication
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updated 16 days ago by
Ram
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written 16 days ago by
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written 18 days ago by
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updated 22 days ago by
Ram
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written 23 days ago by
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25 days ago by
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updated 28 days ago by
Ram
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written 28 days ago by
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updated 28 days ago by
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4 weeks ago by
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written 11 weeks ago by
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updated 6 weeks ago by
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written 6 weeks ago by
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6 weeks ago by
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Recent Replies
Comment: Low mapping rate with Salmon
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Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
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If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value.
https://www.b…
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jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
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I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
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> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes?
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the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
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I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
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For doing this, should I just look at the log.out.file?
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install.packages("pheatmap")
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Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
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J
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The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
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I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
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![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
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