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223 results • Page
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News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
tutorial
News
handbook
updated 4 months ago by
Biostar
970 • written 5.7 years ago by
Istvan Albert
94k
0
votes
0
replies
59
views
News:
2023 EMBL Courses and Conferences
EMBL
EMBLMalaria
EESImaging
7 days ago by
EMBL Events
• 0
0
votes
0
replies
90
views
News:
Online training -Getting the most out of R
R
Science
analysis
Data
8 days ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
91
views
News:
Online training - Cancer Genomics in R
Bioinformatics
Genomics
Cancer
R
8 days ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
89
views
News:
Online training - DNA methylation in plants and animals
OxfordNanopore
DNAMethylation
BSseq
longreads
PacBio
10 days ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
127
views
News:
3rd edition of the Analysis of RNA sequencing data with R/Bioconductor course.
RNAseq
Bioconductor
R
28 days ago by
carlopecoraro2
★ 2.1k
4
votes
1
reply
1.9k
views
News:
2014 ISCB Wikipedia Article Competition announcement
ISCB
competition
Wikipedia
written 8.0 years ago by
Ben
★ 2.0k
1
vote
2
replies
267
views
News:
Online training - Introduction to Nextflow
Bionfirmatics
Pipeline
Workflow
Netflow
10 days ago by
carlopecoraro2
★ 2.1k
4
votes
1
reply
204
views
News:
Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop
ngs
data-analysis
updated 5 weeks ago by
Ram
36k • written 5 weeks ago by
David Langenberger
9.8k
0
votes
0
replies
198
views
News:
Final Call! Tomorrow (7/8) is the Deadline for Phase 1 submissions of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel
indelcalling
bioinformatics
5 weeks ago by
sarah_p
▴ 10
0
votes
0
replies
149
views
News:
Automate your NGS data analyses and create reproducible/scalable pipelines with NextFlow
pipeline
Nextflow
automation
6 weeks ago by
David Langenberger
9.8k
0
votes
1
reply
503
views
News:
Hands-On RNA-Seq Data Analysis Workshop in Leipzig, Germany (October 25-28, 2022)
RNA-Seq
Transcriptomics
NGS
Workshop
6 weeks ago by
David Langenberger
9.8k
0
votes
3
replies
561
views
News:
Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel
indelcalling
bioinformatics
6 weeks ago by
sarah_p
▴ 10
0
votes
0
replies
144
views
News:
EBI Competency Hub Supporting competency-based training and professional development.
ebi
carreer
7 weeks ago by
Pierre Lindenbaum
148k
0
votes
0
replies
152
views
News:
Introduction to Statistics in R for biologists
tydeverse
R
Statistics
7 weeks ago by
carlopecoraro2
★ 2.1k
1
vote
0
replies
147
views
News:
Data analysis with the Tidyverse in July (18th-21st).
Visualization
R
Tidyverse
data-analysis
updated 4 weeks ago by
Ram
36k • written 7 weeks ago by
carlopecoraro2
★ 2.1k
1
vote
0
replies
127
views
News:
Use your standard DNA variant caller for SNP calling in Bisulfite-Seq data
bisulfite
BS-Seq
methylation
7 weeks ago by
David Langenberger
9.8k
0
votes
0
replies
141
views
News:
online training - Data Visualization with Python
Python
Data-Visualization
updated 4 weeks ago by
Ram
36k • written 7 weeks ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
152
views
News:
Cellosaurus release 42 is available
line
cell
biocuration
knowledgebase
database
7 weeks ago by
Amos Bairoch
▴ 110
0
votes
0
replies
152
views
News:
Online course- Reproducibility in Bioinformatics - 11-13 July
Docker
Reproducibility
Bioinformatics
7 weeks ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
192
views
News:
Online statistics courses
R
statistics
10 weeks ago by
carlopecoraro2
★ 2.1k
0
votes
1
reply
228
views
News:
API for accessing SARS-COV-2 genomic data
rpackage
sars
genomics
api
covid
updated 10 weeks ago by
GenoMax
119k • written 10 weeks ago by
Emily
• 0
2
votes
0
replies
182
views
News:
UniProt: Annotation of biologically relevant ligands using ChEBI
binding
protein
site
metal
uniprot
chebi
10 weeks ago by
Elisabeth Gasteiger
★ 2.1k
3
votes
0
replies
212
views
News:
Tutorial on SemiBin (metagenonomics binning tool). June 14 - online
metagenomics
binning
updated 11 weeks ago by
GenoMax
119k • written 11 weeks ago by
Luispedro
▴ 60
0
votes
0
replies
133
views
News:
Nanopore direct RNA Sequencing - online course
Sequencing
direct
Nanopore
RNA
12 weeks ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
132
views
News:
ONLINE COURSE - LINEAR MIXED MODELS IN R - September 26th-30th
Models
Mixed
R
12 weeks ago by
carlopecoraro2
★ 2.1k
7
votes
1
reply
313
views
News:
NGSymposium - Conference in Computational Biology, 23-24.09
ML
statistics
conference
ngschool
12 weeks ago by
kzkedzierska
▴ 290
0
votes
0
replies
156
views
News:
ONLINE course "Population genomic inference from low-coverage whole-genome sequencing data"
lcWGS
Genomics
Population
3 months ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
175
views
News:
Online course - Metabarcoding in microbial Ecology
Ecology
Metabarcoding
Qiime2
Bioinformatics
Microbial
3 months ago by
carlopecoraro2
★ 2.1k
3
votes
1
reply
251
views
News:
Free web seminars related to small non-coding RNA bioinformatics
eu
microRNA
coding
non
club
bioinformatics
RNA
small
3 months ago by
laurent.guyon
▴ 60
0
votes
0
replies
164
views
News:
ONLINE COURSE - RADseq data analysis using Stacks
Phylogenomics
Population
RADseq
Genomics
Stacks
3 months ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
151
views
News:
Online course - Developing R/Bioconductor packages for genomics
develptment
Bioconductor
R
Bioinformatics
packages
3 months ago by
carlopecoraro2
★ 2.1k
1
vote
0
replies
264
views
News:
Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
indelcalling
oncopanel
bioinformatics
3 months ago by
sarah_p
▴ 10
0
votes
2
replies
364
views
News:
ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI
BLAST
3 months ago by
PeterC_NCBI
▴ 100
0
votes
0
replies
100
views
News:
NCBI poster at Bio-IT World on the new cloud BLAST tool, ElasticBLAST
NCBI
BLAST
ElasticBLAST
3 months ago by
PeterC_NCBI
▴ 100
1
vote
0
replies
170
views
News:
DATA ANALYSIS WITH THE TIDYVERSE in July (18th-21st).
tidyverse
data
R
analysis
3 months ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
240
views
News:
Introduction to Nextflow course
Nextflow
3 months ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
184
views
News:
Online Course - A Practical Introduction to NGS Data Analysis (May 16-18, 2022)
NGS
RNA
DNA
Workshop
3 months ago by
David Langenberger
9.8k
6
votes
0
replies
224
views
News:
NGSchool2022: Machine Learning in Computational Biology
summer
machine
learning
school
ngschool
ML
statistics
3 months ago by
kzkedzierska
▴ 290
0
votes
1
reply
215
views
News:
Introduction to Deep Learning course
DeepLearning
MachineLearning
bigdata
updated 3 months ago by
cpad0112
21k • written 4 months ago by
carlopecoraro2
★ 2.1k
2
votes
3
replies
535
views
News:
Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow
NGS
pipeline
3 months ago by
David Langenberger
9.8k
0
votes
0
replies
657
views
News:
Pre-Register for the NCTR Indel Calling from Oncopanel Sequencing Data Challenge with FDA’s National Center for Toxicological Research (NCTR) and pre…
indelcalling
bioinformatics
oncopanel
4 months ago by
sarah_p
▴ 10
0
votes
0
replies
160
views
News:
Virtual Genome Assembly Workshop : May 16-19, 2022
assembly
Genome
Workshop
4 months ago by
singh.vijender
▴ 50
1
vote
0
replies
171
views
News:
Data visualization in Python course
Data
Visualization
Python
4 months ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
148
views
News:
Landscape Genomics in R course
LandscapeGenomics
4 months ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
171
views
News:
Gene Set Enrichment Analysis in R workshop
GSE
4 months ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
152
views
News:
Conservation Genomics Workshop
ConservationGenomics
4 months ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
169
views
News:
A webinar about Harmony batch correction, by its author
scrna-seq
single-cell
rna-seq
4 months ago by
Jennifer Pham
▴ 450
0
votes
1
reply
2.0k
views
News:
Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
Nature
NGS
Sequencing
Bioinformatics
updated 4 months ago by
dariober
13k • written 4 months ago by
Novogene
▴ 160
0
votes
1
reply
647
views
News:
::FINAL CALL:: Online Course | A Practical Introduction to NGS Data Analysis | March 30 - April 1, 2022
DNA-Seq
RNA-Seq
Workshop
4 months ago by
David Langenberger
9.8k
223 results • Page
1 of 5
Recent Votes
Adding ggplot2 chromosome position variable
Answer: what can cause high(> 80%) spike-ins and low read count (<100 reads) in low comp
Comment: WGCNA Labeled Heatmap
gosling: import custom genome sequence
A: Go Term Mapping
Comment: Detect sex chromosomes from WGS on a bird species (with reference genome)
Answer: Trim fasta sequence names
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Recent Replies
Comment: Error PacBio SMRT Link
by
William Rowell
▴ 220
Please reach out to [support@pacb.com](mailto:support@pacb.com) and they'll help you out with this.
Answer: Index genome for Triticum aestivum
by
GenoMax
119k
Use http://ftp.ensemblgenomes.org/pub/plants/release-45/fasta/triticum_aestivum/dna_index/ to get to the index files. Most browsers have s…
Comment: MarkDuplicates gives too few reads
by
wormball
▴ 10
I already have REMOVE_DUPLICATES='false' . It writes file about as big as the input file, but IGV does not show most of the reads in the re…
Answer: what can cause high(> 80%) spike-ins and low read count (<100 reads) in low comp
by
LChart
670
My first instinct is DNAse contamination, which would impact both the input material and the spike-in. If the spike-in reads are very high,…
Comment: Any script that can produce different mutations of protein sequences at specifie
by
fracarb8
▴ 810
You can use `rotkit.mutate` in pyMOL. The basic command should be `mutate(molecule,chain,resi,target,mutframe)` .
Comment: How to generate a mutation schematic diagram
by
Muhammad
• 0
I am aware of the lollipop plots, but I am looking for a plot with this specific design
Comment: MarkDuplicates gives too few reads
by
GenoMax
119k
You have `remove duplicates` set to `false` so no reads should be removed.
Answer: Any script that can produce different mutations of protein sequences at specifie
by
Ernest Bonat
▴ 10
i know if we have any python script for this task. if you can post an example, i can look at it and provide some python code ideas how to d…
Comment: how to use mirdeep2 without a small RNA library
by
Beatriz
• 0
Do you have any idea on what would be a good 100% in silico methodology then? Thank you for your help.
Comment: Cytoscape visualisation issue
by
sarah.laverty20
• 0
Hi there, That worked thanks so much! I have a secondary question: I have now made an interaction network and I am happy with the …
Answer: how to use mirdeep2 without a small RNA library
by
Trivas
▴ 480
Short answer: no. Small RNA-seq library prep kits have a specific chemistry to add sequencing adapters and also undergo a size selection us…
Comment: Correct way to calculate VAF (Variant allele fraction) from a VCF file
by
Hasib
▴ 10
Hi Prasun. So I called my somatic variants using GATK Mutect2. I have 4 individual sample VCF files which I generated using the Tumor-match…
Comment: How to use RSEM to quantify genes and transcript expression from STAR outpute fi
by
Ram
36k
Can you share your STAR command as well? See the STAR command line used by RSEM here: https://github.com/deweylab/RSEM/blob/master/rsem-cal…
Comment: Import a BAM file into SMRT Link
by
sunilthorat
▴ 30
I am using SMRT Link 6.0 for the first time. I already have Plant Genome RAW sequences data from PacBio RS II with files as under: *.ada…
Comment: CellRanger runs into error when running fastq files from SRA
by
GenoMax
119k
It seems clear that `fasterq-dump` should not be used with 10x data at all since others have reported similar issues. You could try emaili…
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