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News: The Biostar Handbook. A bioinformatics e-book for beginners.
handbook tutorial training News
updated 1 day ago by 10 • written 4.3 years ago by 87k
0
votes
0
replies
135
views
News: Bioinformatics Open Source Conference 2021
OBF BOSC Conference
1 day ago by Chris Fields ★ 2.2k
0
votes
0
replies
63
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News: Online training: Data Visualization with Python
Python DataVisualization
2 days ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
151
views
News: Online training - Network Analysis in R
R NetworkAnalysis
5 days ago by carlopecoraro2 ★ 2.0k
1
vote
0
replies
570
views
News: Webinar - Recent and upcoming enhancements in web BLAST and Primer-BLAST! (Wed, April 7, 2021 12:00 PM - 12:45 PM EDT)
primer-BLAST blast
10 days ago by GenoMax 99k
1
vote
0
replies
71
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News: SBGNview: Data Analysis, Integration and Visualization of All Pathways
SMPDB PANTHER Reactome SBGNview Pathview
10 days ago by bigmawen ▴ 400
0
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0
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81
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News: 3-day ONLINE TRAINING - NEXTFLOW
pipeline programming workflow cloud clustering
updated 13 days ago by 99k • written 13 days ago by ★ 2.0k
0
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0
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131
views
News: BioSoftics- An Innovative way to explore Science and Technology
Bioinformatics genome Biotechnology
14 days ago by Asad Bilal ▴ 10
0
votes
0
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169
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News: :: FINAL CALL :: Online Course - A Practical Introduction to NGS Data Analysis (April 28 - 30, 2021)
NGS DNA-Seq Workshop Mapping RNA-Seq
13 days ago by David Langenberger 9.6k
0
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0
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115
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News: Introduction to Deep Learning
Python DeepLearning MachineLearning News
26 days ago by carlopecoraro2 ★ 2.0k
0
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0
replies
102
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News: Learn how to do modern reproducible data science
Snakemake Nextflow Workflows Bionformatics News
4 weeks ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
89
views
News: Noncoding RNA conference (including bioinformatics)
conference bioinformatics RNA noncoding RNA News
4 weeks ago by rory.johnson ▴ 20
0
votes
0
replies
88
views
News: Spring Bioinformatics Courses @ Edinburgh Genomics
RNA-Seq SNP metagenomics training News
4 weeks ago by Edinburgh Genomics Training ▴ 40
0
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1
reply
291
views
News: Results are now Available for the precisionFDA Truth Challenge V2
genome News
updated 4 weeks ago by ▴ 100 • written 8 months ago by ▴ 150
1
vote
0
replies
108
views
News: Online Training - Analysis of Transposable elements
sequence assembly genome News
5 weeks ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
112
views
News: Three x 2day online Python courses
Python News
5 weeks ago by oliverhooker ▴ 60
0
votes
0
replies
114
views
News: Nine x 2day online R courses
R News
5 weeks ago by oliverhooker ▴ 60
2
votes
0
replies
112
views
News: Free Ensembl Browser and REST API virtual workshops in March
Ensembl training REST API workshop genome browser News
updated 5 weeks ago by 99k • written 5 weeks ago by ▴ 90
5
votes
1
reply
441
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey News
6 weeks ago by Jeremy Leipzig 20k
0
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1
reply
90
views
News: The NCBI Datasets command-line tool now provides ortholog data
ncbi gene refseq json News
6 weeks ago by e.cox • 0
0
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0
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139
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News: 5th Berlin Summer School in NGS Data Analysis 2021 (June 7-11)
RNA-Seq DNA-Seq NGS Workshop News
6 weeks ago by David Langenberger 9.6k
0
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0
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126
views
News: 3-day ONLINE TRAINING - NEXTFLOW
Nextflow workflow Bioinformatics News
8 weeks ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
129
views
News: ONLINE training - Single-cell RNA-seq analysis with R/Bioconductor. 07-11 June
R RNA-Seq SingleCell Bioconductor News
8 weeks ago by carlopecoraro2 ★ 2.0k
3
votes
0
replies
191
views
News: Online training - Unix and shell scripting for bioinformatics
Unix Bioinformatics scripting Linux News
10 weeks ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
138
views
News: Cellosaurus release 37 is available
knowledgebase databases news cell line News
11 weeks ago by Amos Bairoch ▴ 110
1
vote
1
reply
148
views
News: ONLINE TRAINING -GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
assembly genome Nanopore News
12 weeks ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
214
views
News: DNA Methylation Data Analysis Workshop (April 12-15, 2021 in Berlin)
Epgenetics Bisulfite Methylation News
12 weeks ago by David Langenberger 9.6k
1
vote
0
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160
views
News: Online training: Advanced Programming in R
R Programming News
12 weeks ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
147
views
News: Tutorial on Detecting Structural Variants in ONT data
structural_variants ONT Tutorial News
updated 12 weeks ago by 47k • written 12 weeks ago by • 0
0
votes
0
replies
325
views
News: Online Workshop: Bioinformatics Pipeline Development with Nextflow (May 3-6, 2021)
Nextflow NGS pipeline bioinformatics News
3 months ago by David Langenberger 9.6k
0
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0
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210
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News: Online Training - GENOME-WIDE PREDICTION OF COMPLEX TRAITS - Last days to apply
next-gen SNP genome News
3 months ago by carlopecoraro2 ★ 2.0k
0
votes
1
reply
376
views
News: :: LAST CALL :: Online Course - A Practical Introduction to NGS Data Analysis (March 1 - 3, 2021)
RNA-Seq DNA-Seq Workshop News
3 months ago by David Langenberger 9.6k
3
votes
0
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221
views
News: ONLINE TRAINING: Environmental Metagenomics
assembly metagenomics nanopore illumina News
3 months ago by carlopecoraro2 ★ 2.0k
2
votes
0
replies
175
views
News: ONLINE TRAINING - Web Applications Development with R Shiny
R Shiny News
3 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
182
views
News: Online Training - An introduction to Nanopore direct RNA Sequencing - last 2 places left
RNA-Seq rna-seq Nanopore News
3 months ago by carlopecoraro2 ★ 2.0k
2
votes
0
replies
209
views
News: Online training - Computational Bayesian methods using brms in R
R Bayesian Statistics News
4 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
191
views
News: ONLINE training - Eukaryotic Metabarcoding
Metabarcoding eDNA News
4 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
213
views
News: New columns added to the web BLAST Descriptions Table including taxonomic info and sequence length
blast ncbi News
4 months ago by GenoMax 99k
2
votes
0
replies
194
views
News: Nanopore direct RNA Sequencing course
RNA-Seq Nanopore News
4 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
353
views
News: Online training - Proteomics in R and Bioconductor
Proteomics R Bioconductor News
5 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
194
views
News: Are Online Trainings for NGS Data Analysis as Effective as In-person Workshops?
DNA-Seq RNA-Seq Workshop News
5 months ago by David Langenberger 9.6k
0
votes
0
replies
201
views
News: Cellosaurus release 36 is available
cell line news knowledgebase database News
5 months ago by Amos Bairoch ▴ 110
8
votes
1
reply
2.1k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
biostar News
written 7.7 years ago by 11k
0
votes
0
replies
262
views
News: Online Training: Epigenomics
RNA-Seq ChIP-Seq next-gen News
5 months ago by carlopecoraro2 ★ 2.0k
1
vote
0
replies
319
views
News: UniProt survey: Tell us what protein information is important to you
uniprot proteome genome database News
5 months ago by Elisabeth Gasteiger ★ 1.9k
0
votes
0
replies
169
views
News: dbSNP/ALFA Video and Live Event (October 29, 2020 at 12noon EST)
SNP genome News
5 months ago by lonphan ▴ 50
1
vote
0
replies
271
views
News: NCBI Web BLAST now offers RefSeq Select databases for faster searches and better results
blast News
5 months ago by GenoMax 99k
0
votes
0
replies
274
views
News: Online Training - GENOME-WIDE PREDICTION OF COMPLEX TRAITS IN HUMANS, PLANTS AND ANIMALS
sequencing genome News
5 months ago by carlopecoraro2 ★ 2.0k
2
votes
0
replies
221
views
News: Get Ensembl training, virtually
ensembl training online News
5 months ago by Emily_Ensembl 22k
0
votes
0
replies
403
views
News: Online Training - Nanopore direct RNA Sequencing
RNA-Seq rna-seq Nanopore News
5 months ago by carlopecoraro2 ★ 2.0k
143 results • Page 1 of 3
Recent Votes
A: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
A: What the index means in illumina RNA-seq data file?
C: What is difference between bulk RNAseq and mRNAseq?
Answer: Taxonomy assignment of viral RNA
Answer: RNAseq data analysis of pooled data
Comment: RNAseq data analysis of pooled data
Answer: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
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Recent Replies
Comment: Using outgroup in gene family dendograms by Mensur Dlakic ★ 10k
> Wouldn't a gene that isn't an ABC superfamily member from some distant species suffice as an outgroup candidate here? Most definitely no…
Comment: Testing independence between 5' and 3' terminal sequences in a DNA database by Istvan Albert 87k
with that definition I would suspect that all of your sequences are "dependent", I would expect every functional DNA/RNA region to capture …
Comment: Taxonomy assignment of viral RNA by biobiu ▴ 120
Thanks! As for the blast option- (1) so do you suggest to just blast the contig against a db of viral RNAs? and (2) is there a comprehensiv…
Comment: Finding how many times a nucleotide appear in the same position by cpad0112 15k
#!/usr/bin/env python3 sequences = ["GAGGTAAACTCTG", "TCCGTAAGTTTTC", "CAGGTTGGAACTC", "ACAGTCAGTTCAC", "TAGGTCATTACAG", "TAGG…
Comment: Testing independence between 5' and 3' terminal sequences in a DNA database by Anand Rao ▴ 350
Thanks for your reply. Yes, I think I could have explained my problem much better, but rather than change my original post, I will add some…
Answer: Finding how many times a nucleotide appear in the same position by Dunois ▴ 600
Here's a little `python` function you can work off of: def count_quer_at_pos_in_seq(seqs, quer = "A"): #Initialize a list…
Comment: Using outgroup in gene family dendograms by Rogerio Ribeiro ▴ 50
Thank for the fast reponse. The ABC family is not the best example for this question indeed. The objective of my work is to find genes resp…
Answer: Taxonomy assignment of viral RNA by Zhilong Jia ★ 1.7k
1. Blast directly 2. [IDSeq][1], can get viral contigs and their annotation directly. [IDSeq : An open-source cloud-based pipeline and…
Comment: Finding how many times a nucleotide appear in the same position by hugo.avila ▴ 180
Hi, It is not a norm but it is a good practice to post an attempted resolution first and then other members try to correct it or suggest an…
Comment: What Do You Waste Your Time On by ponganta ▴ 150
Aye to the rushed analyses and the last-minute documentation. Horrible, but somehow it happens all the time.
Answer: What Do You Waste Your Time On by ponganta ▴ 150
Reinventing the wheel. Like, all the time. Why use clusterProfiler with an up-to-date GO-annotation, when you can just write your own clien…
Comment: RNAseq data analysis of pooled data by ponganta ▴ 150
By "pooled" data, do you mean data from tissue-specific bulk-RNAseq? Or did you pool single cell (SC) RNAseq-libraries?
Comment: RNAseq data analysis of pooled data by Dunois ▴ 600
What exactly do you mean by "pooled" data?
Answer: RNAseq data analysis of pooled data by grant.hovhannisyan ★ 2.1k
I made a tutorial last year for University students on this topic https://www.loom.com/share/a55c1dedb8e64e7cac47f6595b751de7. Let me know …
Comment: RNAseq data analysis of pooled data by luffy • 0
@dunois Thank you for the tutorial, what are your thoughts for approach for pooled data? should i follow the documentation/the tutorial or …
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