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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 7 weeks ago by 2.0k • written 6.8 years ago by 98k
0
votes
1
reply
343
views
News: FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq Workshop RNA-seq
1 day ago by David Langenberger 10k
0
votes
0
replies
119
views
News: Course - Gene Set Enrichment Analysis in R/Bioconductor
GeneSetEnrichmentAnalysis R Genomics Bioconductor GSEA
2 days ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
113
views
News: New NCBI Datasets APIs to Replace Old Ones
NCBI API Datasets
7 days ago by PeterC_NCBI ▴ 330
0
votes
0
replies
117
views
News: RADseq data analysis course
RADseq Phylogenomics Bioinformatics Populationgenomics Stacks
9 days ago by carlopecoraro2 ★ 2.4k
0
votes
1
reply
195
views
News: EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 10 days ago by 40k • written 11 days ago by • 0
1
vote
0
replies
175
views
News: Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow automation pipeline development
11 days ago by David Langenberger 10k
2
votes
1
reply
228
views
News: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI Codeathon
updated 8 days ago by 10k • written 11 days ago by ▴ 330
0
votes
0
replies
173
views
News: Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop scRNA-Seq RNA-Seq single-cell
updated 11 days ago by 40k • written 12 days ago by 10k
0
votes
0
replies
162
views
News: Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis sars-cov-2 spike-protein
updated 12 days ago by 40k • written 12 days ago by • 0
0
votes
0
replies
145
views
News: Course: Data Manipulation and Visualisation with Python
Python Data-Visualization Data-Manipulation
updated 14 days ago by 40k • written 14 days ago by ★ 2.4k
0
votes
2
replies
588
views
News: The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics radseq stacks
updated 14 days ago by ★ 1.4k • written 14 days ago by ▴ 110
0
votes
0
replies
144
views
News: Course - GLMMs in R
GLMM Mixed-Models
updated 14 days ago by 40k • written 15 days ago by ★ 2.4k
0
votes
0
replies
146
views
News: Introduction to Nextflow (2 seats left)
Nextflow Workflow Reproducibility
updated 14 days ago by 40k • written 15 days ago by ★ 2.4k
0
votes
0
replies
149
views
News: Genomic Prediction course
Bioinformatics GWAS GenomicPrediction
15 days ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
130
views
News: course - Population Genomics Using Ancient DNA Data
Bioinformatics PopulationGenomics Genomics aDNA
15 days ago by carlopecoraro2 ★ 2.4k
3
votes
5
replies
869
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 20 days ago by ▴ 30 • written 10 months ago by ▴ 30
0
votes
0
replies
142
views
News: NCBI ClinVar XML update to accomodate somatic variants
SNP NCBI XML ClinVar
20 days ago by PeterC_NCBI ▴ 330
0
votes
0
replies
117
views
News: Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
bioinformatics screening virtual
updated 21 days ago by 135k • written 21 days ago by • 0
0
votes
0
replies
126
views
News: RNAseq data analysis with R/Bioconductor
R RNAseq Bioconductor
21 days ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
152
views
News: Course - RNAseq in non-model organisms
R RNAseq DifferentialExpressionAnalysis Bioconductor
23 days ago by carlopecoraro2 ★ 2.4k
4
votes
2
replies
269
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
27 days ago by PeterC_NCBI ▴ 330
0
votes
0
replies
137
views
News: Virtual Variant Detection Workshop: September 11-14, 2023
tutorial detection genomics workshop variant
27 days ago by mia.nahom ▴ 10
0
votes
0
replies
149
views
News: Introduction to Deep Learning for Biologists course
Python Deep-Learning Machine-Learning
updated 28 days ago by 40k • written 28 days ago by ★ 2.4k
0
votes
0
replies
135
views
News: Course - Reproducibility Data Analysis with R
R renv VersionControl Reproducibility
28 days ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
210
views
News: Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq training single-cell-RNA-seq
updated 4 weeks ago by 40k • written 4 weeks ago by • 0
0
votes
0
replies
268
views
News: Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics Genomics aDNA Adaptation-Genomics
updated 4 weeks ago by 40k • written 4 weeks ago by ★ 2.4k
0
votes
0
replies
142
views
News: Course on Phylogenomics
Phylogenetic-Inference Divergence-Time-Estimation Genomics Phylogenomics
updated 4 weeks ago by 40k • written 4 weeks ago by ★ 2.4k
0
votes
0
replies
177
views
News: Course. -Multivariate Data Analysis with R and vegan
R vegan MultivariateDataAnalysis
5 weeks ago by carlopecoraro2 ★ 2.4k
2
votes
2
replies
334
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
5 weeks ago by PeterC_NCBI ▴ 330
1
vote
0
replies
151
views
News: Course - Introduction to CRISPR
CRISPR Evolution GenomeEditing
6 weeks ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
166
views
News: Upcoming Learning Opportunities and Important Updates
R Programming aDNA Paleogenomics
6 weeks ago by carlopecoraro2 ★ 2.4k
3
votes
5
replies
1.8k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
6 weeks ago by Alexander ▴ 200
0
votes
0
replies
187
views
News: Spatial Omics course
MultiplexedImageAnalysis SpatialOmics
7 weeks ago by carlopecoraro2 ★ 2.4k
1
vote
0
replies
272
views
News: Generalized Additive Models in R
R GAMs Courses
7 weeks ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
168
views
News: NIAID Data Ecosystem Discovery Portal
databases data opendata api
8 weeks ago by ehaag ▴ 20
0
votes
0
replies
192
views
News: Course - Structural Variant detection and comparison
SVs Structural-Variants
updated 7 weeks ago by 40k • written 8 weeks ago by ★ 2.4k
0
votes
0
replies
210
views
News: course -Developing R/Bioconductor Packages for Genomics
R Genomics Bioconductor
updated 8 weeks ago by 40k • written 8 weeks ago by ★ 2.4k
4
votes
3
replies
642
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
5 weeks ago by PeterC_NCBI ▴ 330
0
votes
0
replies
236
views
News: Course - Data Visualization in R with ggplot2
R Data-Visualization ggplot2
updated 9 weeks ago by 40k • written 9 weeks ago by ★ 2.4k
38
votes
7
replies
1.7k
views
News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
9 weeks ago by David Langenberger 10k
9
votes
4
replies
2.1k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 weeks ago by 40k • written 2.1 years ago by ★ 2.4k
0
votes
0
replies
276
views
News: Course - RADseq data analysis with Stacks
RADseq Phylogenomics Stacks Population-genomics
updated 8 weeks ago by 40k • written 10 weeks ago by ★ 2.4k
0
votes
0
replies
227
views
News: course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms DNA-Methylation BS-seq
updated 8 weeks ago by 40k • written 11 weeks ago by ★ 2.4k
2
votes
0
replies
334
views
News: Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
12 weeks ago by Marcel Ribeiro-Dantas ▴ 440
0
votes
0
replies
252
views
News: 2-day Course on Introduction to Nextflow
Workflow Reproducibility Nextflow
updated 12 weeks ago by 40k • written 12 weeks ago by ★ 2.4k
0
votes
0
replies
214
views
News: Physalia courses in September
Genomics R Data-Science
updated 3 months ago by 40k • written 3 months ago by ★ 2.4k
0
votes
0
replies
282
views
News: Cellosaurus release 46
knowledgebase cell-line cellosaurus
3 months ago by Amos Bairoch ▴ 110
0
votes
0
replies
203
views
News: Course - Data Manipulation and Visualization in Python
Data-Manipulation Data-Visualisation Python
updated 3 months ago by 40k • written 3 months ago by ★ 2.4k
0
votes
0
replies
356
views
News: Kindle edition of book NO LONGER available. Book available for free
Computational-Biology
3 months ago by sinha.shriprakash ▴ 20
1,000 results • Page 1 of 20
Recent Votes
Answer: Search RCSB with a list of protein names?
Answer: Search RCSB with a list of protein names?
Comment: Split reads along the genome in my samples
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
A: How to select aligned reads below certain mapping Quality (from BWA)?
Answer: Using R in Conda
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Recent Replies
Answer: pheatmap by georgii.vdovin • 0
Hi, you could maybe try releveling the factor when you define them in your coldata, because otherwise it's alphabetic: ```r colData$condit…
Comment: Issues with featureCounts by biofalconch ★ 1.0k
What does the summary say? (featureCounts generates a summary file with different classifications, more about it on the subread manual unde…
Comment: TEtranscripts Tool in Galaxy by biofalconch ★ 1.0k
Providing what you have already tried as well as the error messages you get can go a long way :). Nevertheless, here is the github repo fro…
Comment: Convert amino acid sequences into nucleotide sequences by Joe 21k
You will need to look at `seqkit`'s regex and other advanced matching tools in that case, since you can't use simple string matches. …
Comment: How can I compute energy from a protein PDB file? by Matthias Zepper 4.1k
Not at all my field of expertise, but the [AMBER package][1] is what we used in our protein bioinfo classroom exercise back in the day. I t…
Comment: Convert amino acid sequences into nucleotide sequences by sperezilvia ▴ 10
I have a problem. The SeqID from the nucleotide.fasta doesn't match with the SeqID from the protein.fasta because in the protein.fasta the …
Comment: How to plot coverage and depth statistics of a bam file by William ▴ 20
Hi Jinli, It seems to be related to the pandas version you are using. Which version are you using? Try to install the latest version and s…
Comment: QC of genetic data by kl ▴ 10
Thanks for the advice. What about the third column (GS in plink). I am used to it being 0? And last question, what does it mean when there …
Comment: Is there any way i can determine the kit used for library preparation for whole by ATpoint 77k
You can align the data and then determine coverage over the exons, then checking which kit (based on what they promise to capture) it fits …
Comment: Installation: Tax4Fun2 package are not found and github repository is not mainta by zx8754 11k
https://github.com/ZihaoShu/Tax4Fun2 has tar file `Tax4Fun2_1.1.5.tar.gz`, download and [install from source](https://stackoverflow.com/q/…
Answer: Bioinformatics short paper journal resource [software/webapps/database] by Gennady Khvorykh ▴ 100
[NAR Genomics and Bioinformatics][1] also has Application Notes section for short (up to 3000 words) articles devoted to program, workflow,…
Comment: Bam sort merge error? by Pierre Lindenbaum 157k
it's just a log about : https://en.wikipedia.org/wiki/External_sorting and about https://en.wikipedia.org/wiki/Merge_sort
Answer: I need help with univariate logistic regression in a set of microarray data by DareDevil ★ 3.3k
LR can be sensitive to the scale of your predictor variable. Since your gene expression values are all within a small range (between 8 and …
Comment: identify DEGs across all conditions and per specific conditions by Yogi ▴ 40
Glad to hear!
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool? by Yogi ▴ 40
Fair enough
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