Moderator: David Langenberger
David Langenberger ♦ 9.1k
- Reputation:
- 9,120
- Status:
- Trusted
- Location:
- Deutschland
- Website:
- http://www.ecseq.com/
- Twitter:
- ecSeq
- Scholar ID:
- Google Scholar Page
- Last seen:
- 1 day, 19 hours ago
- Joined:
- 7 years, 9 months ago
- Email:
- d*****************@ecseq.com
Bioinformatician with focus on computational and statistical analysis of sequencing data.
- PhD in Bioinformatics with focus on small non-coding RNAs and high-throughput sequencing
- 10 years of programming experience (Perl, C, R)
- Experience in statistical and automated analysis of big datasets
- strong scientific publication record
Specialties: next-generation sequencing, transcriptomics, small non-coding RNAs, training, consulting, networking
Posts by David Langenberger
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... Next-Generation Sequencing Data Analysis for Beginners
------------------------------------------------------
**11-13 December 2019 | Munich, Germany**
Link: [https://www.ecseq.com/workshops/workshop_2019-08-NGS-Next-Generation-Sequencing-Data-Analysis-A-Practical-Introduction][1]
![enter image d ...
written 15 days ago by
David Langenberger ♦ 9.1k
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... Course on Programming for Evolutionary Biology
----------------------------------------------
**When:** March 2nd - March 18th 2020
**Location:** Berlin, Germany
**Application deadline:** October 25th 2019
**Detailed information about the course content and how to apply:**
[http://evop.bioin ...
written 9 weeks ago by
David Langenberger ♦ 9.1k
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... Advance your research. Understand NGS and analyze sequenced data yourself.
**When?**
October 23 - 25, 2019
**Where?**
Munich, Germany
**Link?**
https://www.ecseq.com/workshops/workshop_2019-06-NGS-Next-Generation-Sequencing-Data-Analysis-A-Practical-Introduction
**Scope**
The purpose of this wor ...
written 11 weeks ago by
David Langenberger ♦ 9.1k
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... The intention was to discuss it. That’s why I chose the title: To the Cloud or Not to the Cloud
Do you have experiences/feelings here? In a lot of research projects, the anonymisation is done by just hiding the names. That seems not to be enough. ...
written 4 months ago by
David Langenberger ♦ 9.1k
12
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5 follow
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... [To Cloud or Not to Cloud - Privacy implications of genetic data sharing][1]
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Data is the new oil has been the slogan of recent years, explaining the tremendous rise in power and the data hunger of tech companies such as Facebook. Emails, contacts, social ...
written 4 months ago by
David Langenberger ♦ 9.1k
• updated
4 months ago by
anneykim • 0
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... RNA-Seq Data Analysis Workshop
------------------------------
Quality Control, Read Mapping, Visualization and Downstream Analyses
**In a nutshell**
- **Learn** the essential computing skills for NGS bioinformatics
- **Understand** NGS analysis algorithms (e.g. read alignment) and data
forma ...
written 4 months ago by
David Langenberger ♦ 9.1k
4
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... Maybe you have already heard about UMIs and how they can help to reduce errors and quantitative biases in your Next-Generation Sequencing (NGS) experiment. But do you know how they work and how you should handle them bioinformatically after sequencing? Here we will shortly introduce these newly deve ...
written 5 months ago by
David Langenberger ♦ 9.1k
2
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Answer:
A: Problem with QiaSeq panel
... Hi Peter,
our genetic testing software 'Seamless NGS' offers an easy-to-use workflow for the analysis of Qiagen's QiaSeq panels.
Before mapping the reads, the common sequence and the UMIs are clipped away. After mapping, the UMIs sequences are properly used to correct for PCR clones and the singl ...
written 6 months ago by
David Langenberger ♦ 9.1k
2
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... @genomax Thanks! I saw it in the post and already answered it.
@Peter If you just reply, the post should not be moved to the first page. Only if you add an answer. Perhaps somebody saw you adding your reply as an answer and changed it. That might be the explanation why it disappeared. ...
written 6 months ago by
David Langenberger ♦ 9.1k
1
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514
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... Dear Peter,
we will show how UMIs work. Regarding the tools: Try e.g. UMI-tools. ...
written 6 months ago by
David Langenberger ♦ 9.1k
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