Moderator: David Langenberger
David Langenberger ♦ 9.0k
- Reputation:
- 9,020
- Status:
- Trusted
- Location:
- Deutschland
- Website:
- http://www.ecseq.com/
- Twitter:
- ecSeq
- Scholar ID:
- Google Scholar Page
- Last seen:
- 12 hours ago
- Joined:
- 7 years, 5 months ago
- Email:
- d*****************@ecseq.com
Bioinformatician with focus on computational and statistical analysis of sequencing data.
- PhD in Bioinformatics with focus on small non-coding RNAs and high-throughput sequencing
- 10 years of programming experience (Perl, C, R)
- Experience in statistical and automated analysis of big datasets
- strong scientific publication record
Specialties: next-generation sequencing, transcriptomics, small non-coding RNAs, training, consulting, networking
Posts by David Langenberger
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... The intention was to discuss it. That’s why I chose the title: To the Cloud or Not to the Cloud
Do you have experiences/feelings here? In a lot of research projects, the anonymisation is done by just hiding the names. That seems not to be enough. ...
written 9 days ago by
David Langenberger ♦ 9.0k
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... [To Cloud or Not to Cloud - Privacy implications of genetic data sharing][1]
--------------------------------------------
Data is the new oil has been the slogan of recent years, explaining the tremendous rise in power and the data hunger of tech companies such as Facebook. Emails, contacts, social ...
written 9 days ago by
David Langenberger ♦ 9.0k
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5 follow
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... RNA-Seq Data Analysis Workshop
------------------------------
Quality Control, Read Mapping, Visualization and Downstream Analyses
**In a nutshell**
- **Learn** the essential computing skills for NGS bioinformatics
- **Understand** NGS analysis algorithms (e.g. read alignment) and data
forma ...
written 15 days ago by
David Langenberger ♦ 9.0k
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... Maybe you have already heard about UMIs and how they can help to reduce errors and quantitative biases in your Next-Generation Sequencing (NGS) experiment. But do you know how they work and how you should handle them bioinformatically after sequencing? Here we will shortly introduce these newly deve ...
written 7 weeks ago by
David Langenberger ♦ 9.0k
2
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2
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Answer:
A: Problem with QiaSeq panel
... Hi Peter,
our genetic testing software 'Seamless NGS' offers an easy-to-use workflow for the analysis of Qiagen's QiaSeq panels.
Before mapping the reads, the common sequence and the UMIs are clipped away. After mapping, the UMIs sequences are properly used to correct for PCR clones and the singl ...
written 9 weeks ago by
David Langenberger ♦ 9.0k
2
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... @genomax Thanks! I saw it in the post and already answered it.
@Peter If you just reply, the post should not be moved to the first page. Only if you add an answer. Perhaps somebody saw you adding your reply as an answer and changed it. That might be the explanation why it disappeared. ...
written 9 weeks ago by
David Langenberger ♦ 9.0k
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... Dear Peter,
we will show how UMIs work. Regarding the tools: Try e.g. UMI-tools. ...
written 9 weeks ago by
David Langenberger ♦ 9.0k
4
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... Hey Morris_Chair,
thanks for your input. The course (of course) includes an introduction to Linux where we explain how to use it. 80% of our participants never worked with Linux before! Of course, they are no Linux experts in the end, but they know the basics, like how to change/create/delete/move ...
written 3 months ago by
David Langenberger ♦ 9.0k
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... ![enter image description here][1]
Dr. Giovanni Marco Dall'Olio is a bionformatics investigator at Glaxo Smith Kline (GSK) in Stevenage, UK.
Giovanni studied biotechnology and bioinformatics in Bolognia, Italy. His PhD was focused on human population genetics, in the Evolutionary Biology group at ...
written 3 months ago by
David Langenberger ♦ 9.0k
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... **NGS-based research, empowering medical professionals through user-friendly software, and achieving work-life balance**
*Interview by Claudia S. Copeland, PhD; Conversations with Bioinnovators series*
Read the full interview [here][1]
![enter image description here][2]
[1]: https://www.link ...
written 4 months ago by
David Langenberger ♦ 9.0k
Latest awards to David Langenberger
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1 day ago,
created a question with more than 5,000 views.
For Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
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6 days ago,
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For C: Repetitive Regions In Hg18
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For A: Renaming Entries In A Fasta File
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created a question with more than 1,000 views.
For Postdoc in bioinformatics – Department of Molecular Oncology
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For Postdoc in bioinformatics – Department of Molecular Oncology
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For Postdoc in bioinformatics – Department of Molecular Oncology
Epic Question
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created a question with more than 10,000 views.
For Attention: Bowtie2 And Multiple Hits
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created a question with more than 1,000 views.
For Postdoc in bioinformatics – Department of Molecular Oncology
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For C: Benchmark - Comparison of Different NGS Mappers
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For C: Converting Sam Files To Bam Files - Reproduce Results Nature Paper: Transcriptom
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For C: Repetitive Regions In Hg18
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created a question with more than 1,000 views.
For Postdoc in bioinformatics – Department of Molecular Oncology
Appreciated
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For A: Renaming Entries In A Fasta File
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created a comment with at least 3 up-votes.
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For A: Renaming Entries In A Fasta File
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For A: Bed File Of Reads To Wiggle File Of Numbers Of Features At Each Position
Teacher
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For A: Bed File Of Reads To Wiggle File Of Numbers Of Features At Each Position
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For Postdoc in bioinformatics – Department of Molecular Oncology
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created a question with more than 1,000 views.
For Postdoc in bioinformatics – Department of Molecular Oncology
Popular Question
11 months ago,
created a question with more than 1,000 views.
For Postdoc in bioinformatics – Department of Molecular Oncology
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For A: Renaming Entries In A Fasta File
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