AGP file format

Question

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I am trying to submit whole genome file under Genomes (WGS) SRA.

I am getting following error: expecting 9 tab-separated columns, found 1

Can anyone help me to fix this?

Thanks in anticipation

Answer 1

[Prakki Rama]

Few days back I wanted AGP file too. Then I came across this script at Github.

Edit: Here is my agp file:

Chr 1       108932  234     W       contig_235      1       108932  +
Chr 108933  190826  235     N       81894   fragment        yes

Answer 2

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I am using same script. But the output file is throwing the error while uploading. Your sequence header contains 9 columns?? if yes please post an example