Hi I'm working GSE55945 and got an unexpected error in ReadAffy command I'll be very thankful if anyone can help me in solving it.
gse55945preset=ReadAffy(filenames = celFiles)
Error:
Error in read.affybatch(filenames = l$filenames, phenoData = l$phenoData, :
It appears that the file GSE55945/GSM1348937_110807_HGU133_PLUS_2.0_MS_36A6.CEL.gz is corrupted.
What does this error means??
Isn't it pretty self-explanatory? Maybe you want to set
compress=T
in your call toReadAffy
I just don't understand what do you mean by compress=T??
Try
gse55945preset=ReadAffy(filenames = celFiles, compress=T)
. Alternatively, have you checked to see that your GSE dataset was downloaded completely?Again I got same error.