Formula behind PLINK --het
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9.3 years ago
Li • 0

What is the formula behind --het in PLINK?

The goal is to understand why these two differ:

  1. observed and expected heterozygosity calculated per indivual using --het and then averaged for the population

  2. observed and expected heterozygosity given by --hardy per SNP and then averaged for the population
PLINK het formula heterozygosity • 3.5k views
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