Using esearch/efetch to download microbial genomes from a list of taxon id
0
0
Entering edit mode
7.5 years ago
muslih14 • 0

I have a .txt file with a list of 200 taxon IDs and would like to download the genomes from NCBI using esearch and efetch.

genome edirect • 2.3k views
ADD COMMENT
0
Entering edit mode

Be more specific about what you want. Do you want all genomes pertaining to each taxon ID or maybe just the reference genome? To what assembly level do you want them?

In addition, what have you tried yourself to make this happen?

ADD REPLY

Login before adding your answer.

Traffic: 2471 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6