Data resources for Chromatin accessibility (DNAse, FAIRE, ATAC - seq) and Transcriptomics (RNA-seq, expression profilling)

Question

[Bioinformatist Newbie]

I know following resources which have DNAse-seq and mRNA-seq data for different tissue/cell samples. If you know some other studies or resources, then kindly share that information:

1. ENCODE (https://www.encodeproject.org/search/?type=Experiment)

2. Roadmap (http://www.roadmapepigenomics.org/data/tables/all)

Answer 1

[apa@stowers]

You are basically looking for a public repository (google "sequencing public repository", for instance)

Here are a few more big ones which handle next-gen sequencing data:

• GEO (https://www.ncbi.nlm.nih.gov/geo/)
• SRA (https://www.ncbi.nlm.nih.gov/sra)
• ArrayExpress (https://www.ebi.ac.uk/arrayexpress/)
• ENA (http://www.ebi.ac.uk/ena)
• modENCODE (http://www.modencode.org/)