Binning for multi-cell MDA samples

Question

[tans0307]

Hello all,

I have performed multi-cell FISH-FACS and downstream multiple displacement amplification.

After decontamination of contigs, I have discovered the presence of two genomes.

Most binning software were designed for normal metagenomics dataset, and not for multi-cell MDA.

Will appreciate any binning tools for MDA samples.

Thanks!