Heterozygosity levels small sample size
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7.2 years ago

Hello all,

I was wondering what is the best way to compare the heterozygosity levels in my data set for which I have ~70,000snps but 4 individuals per population. I am actually interested in comparing the heterozygosity levels between the main broad groups of populations (for each group I have 5-10 populations) and not between the actual populations.

Thank you very much for your help in advance.

SNP next-gen • 1.2k views
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Entering edit mode
7.2 years ago

Is this data in VCF file format? It seems like the best way to achieve your goal is to write a Perl or Python script.

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