What is the best tool for allele specific chromatin accessibility QTL analysis?
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8.5 years ago
Milos Pjanic ▴ 30

I came across RASQUAL http://www.ncbi.nlm.nih.gov/pubmed/26656845

and WASP http://www.ncbi.nlm.nih.gov/pubmed/26366987

Probably there are more. Is there a comparative analysis of various allele specific tools? 

ChIP-Seq RNA-Seq allele specific analysis • 1.1k views
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