what are different methods available to compare two GRNs and detect differences between them.
graphlet based metrics
If you can import them to Cytoscape, it has tools to find the union, intersection, etc of the two networks.
You may also have a look at Lichtblau et al. and Ghazalpour et al.
I agree, there you could use DyNet app (http://apps.cytoscape.org/apps/dynet)
Thank you but I am not looking for tools I am looking for methods through which two networks can be compared
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