PRSS3 and sequence similarity
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8.0 years ago
tony ▴ 30

I am using the PRSS Server (link below), to test sequence similarity between two sequences. I do not have a statistics background and am having trouble understanding the results page. These are the results that I am getting:

44000 residues in 200 sequences (shuffled) MLE statistics: Lambda= 0.2386; K=0.09429 Kolmogorov-Smirnov statistic: 0.0668 (N=23) at 48

Smith-Waterman (3.5 Sept 2006) function [default.mat matrix (15:-5)], open/ext: -12/-2The best scores are: s-w bits E(200) Test2 220 ( 220) 91 34.7 0.00026

Which numbers tell me the P-value? If anyone knows and can help me out i'd greatly appreciate it. Thanks

http://www.ch.embnet.org/software/PRSS_form.html

sequence alignment • 1.1k views
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