cell type specific TAD coordinates and orientations for Hi-C

Question

[alireza346]

do you guys know how I can predict TAD coordinates and orientations for Hi-C and 4C data analysis for specific cells type. or if there is any BED file available containing TAD coordinates and orientations for specific cells, would you please let me know where I can find it?

Answer 1

[jared.andrews07]

The 4D Nucleome project is the best repository for this sort of data I've found. Be sure to tick the little "Show External Data" widget for a full view. What do you mean by TAD orientation?

For coordinates, your best bet is to go hunt for the publication for whatever cell type(s) you're interested in.