Alternative to mummerplot

Question

[Helena]

Hi everyone,

I had troubles running mummerplot and I was wondering if there is any other program that works similar, i.e. it needs to show plot of already aligned sequences in mummer.

Thank you!

Answer 1

[Vitis]

Maybe mummer alignment output could be parsed in some ways so you may have options to plot the results in R or something else. See this:

https://metacpan.org/pod/distribution/Bio-Gonzales/bin/coords2gff.pl