exonerate segmentation fault

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4.3 years ago

mariarao56 • 0

I've been using exonerate version 2.2.0. I'm trying to use the multi-threading functionality with exonerate server.

First I load the .esi file on the server.

exonerate-server filename.esi --port 99125

Submit an exonerate job on the server

exonerate filename.fasta hostname:99125

At this point, the job successfully runs on the server. Since the server by default opens 4 connections, when I submit the second exonerate job, the server stops and I get a segmentation fault message.

I've also used the multithreading option with exonerate, I get the same issue.

Kindly help

exonerate • 1.1k views

ADD COMMENT • link 4.3 years ago by mariarao56 • 0

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Segmentation faults happen when software tries to access memory outside the range assigned to it. This can happen either by programming error, or bad input data, but by far the most common cause of a Seg Fault is running out of memory.

ADD REPLY • link 4.3 years ago by i.sudbery 19k

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Thank you for your reply! I was wondering if there was a programming bug in the exonerate-server code?

ADD REPLY • link 4.3 years ago by mariarao56 • 0

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