PMRA array (Axiom Analysis Suite)

Question

[fatma.mokhtar]

Hello All,

I am new in Axiom Analysis Suite. I have used 5 PMRA arrays to analyze human samples, and we used the Axiom analysis suite to perform the quality control for the samples. In the next step, - I want to perform SNPs selection: with MAF of (0.25-0.49), in the coding region, is there another step to reduce the candidate SNPs or is this a good way to start? - What are the best steps to follow, or the logical way to handle the data of the PMRA array? is there a paper that has used this array and describes the steps that are followed to link the genotypes to the phenotypes?

Thanks,