VCF rare variants and exon
0
0
Entering edit mode
4.1 years ago
raalsuwaidi ▴ 100

Dear all,

i am new to the new genomics field. i have a vcf file which i managed to extract. i need your help filtering it to identify rare variants and exonic and non-exonic loci. i couldnt find much options in bcftools though.

thanks in advance

vcf exon rare variants • 1.2k views
ADD COMMENT
0
Entering edit mode

Try to annotate it for example in VEP (https://grch37.ensembl.org/info/docs/tools/vep/index.html) and than you can easily filter coding variants from the apposite column it gives to you

ADD REPLY
0
Entering edit mode

Thank you so much. I will give it a try

ADD REPLY

Login before adding your answer.

Traffic: 1532 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6