Whenever I try to use Anaconda's shapeit, I get the error: 'Segmentation fault (core dumped)'.
Here is the steps I used to get shapeit.
First I downloaded Anaconda.
Then I downloaded shapeit via conda install -c dranew shapeit.
Then when I tried to run shapeit, I got the following errors:
shapeit: /lib64/libc.so.6: version 'GLIBC_2.14' not found (required by shapeit)
shapeit: /usr/lib64/libstdc++.so.6: version 'GLIBCXX_3.4.15' not found (required by shapeit)
To resolve the first error, I downloaded newer version of glibc using conda install -c asmeurer glibc.
To resolve the second error, I downloaded newer version of libgcc using conda install libgcc.
After this, when I try to run shape it, the previous two errors disappeared, but where replaced by the Segmentation fault (core dumped) error. I'm at my wits end trying to figure out what to do next. I come from a biology background, so I'm still new to this. I read that this error has to do with memory, so I've cleared a lot of memory as well by deleting stuff.
What should I do to be able to use shapeit?
Can you try creating a new environment and try a clean install ? I would suggest to install major dependencies first and then install shapeit.
Fun fact: Sometimes conda is messed up and we keep trying installing missing things and it keeps destroying everything.