FASTQC per base sequence quality plot

Question

[pancakeplant]

Hi all, I have a set of fastqc outputs and I was wondering whether the per base sequence quality plots look fine. These are the two example plots:

Thank so much!

Answer 1

[rpolicastro]

The quality looks really good. Most of your reads have close to the maximum quality score you usually see for Illumina sequencing.

[pancakeplant]

Cool, thanks so much!!