Question

NCBI Genome Workbench tool

0

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4.5 years ago

DKA ▴ 40

Hello everyone,

May I ask if it is possible for the "NCBI Genome Workbench tool" to convert BAM file into VCF file, please?

Thanks

alignment • 1.0k views

ADD COMMENT • link updated 4.5 years ago by vkkodali_ncbi ★ 3.8k • written 4.5 years ago by DKA ▴ 40

score 1 · Answer 1 · 2021-01-03

1

Entering edit mode

4.5 years ago

vkkodali_ncbi ★ 3.8k

No, NCBI Genome Workbench does not have this capability. You will need to use a variant caller (for example, bcftools) for this purpose.

ADD COMMENT • link 4.5 years ago by vkkodali_ncbi ★ 3.8k