Entering edit mode
                    4.8 years ago
        Sbrillo
        
    
        ▴
    
    10
    Hi!
I want to download all the PacBio reads from this experiment: SRS667972 ( SRX668744 - SRX668812) using the SRA-toolkit
I know from a previous post that something like that should work:
 for (( i = 744; i <= 812; i++ ))
  do
  fastq-dump --accession SRX668$1
done
How can I change the loop to merge all the reads together while downloading them?