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10.3 years ago
edwee
•
0
I have some dssp files in a folder f1. I want to extract the lines from these files only if the values in the phi and psi column between -67<=phi<=-99 and 100<=psi<=165 I would like to save the outputs in to another folder f2 with the input file names. I think, it's very difficult to extract with awk. I highly appreciate your valuable suggestions.
# RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA
1 98 A E 0 0 236 0, 0.0 2,-0.2 0, 0.0 21,-0.0 0.000 360.0 360.0 360.0 145.2 53.5 26.9 4.7
2 99 A I - 0 0 96 21,-0.0 2,-0.4 19,-0.0 21,-0.1 -0.518 360.0-159.2 -82.9 141.2 50.2 25.1 4.2
3 100 A I - 0 0 34 -2,-0.2 19,-2.4 154,-0.2 2,-0.6 -0.930 8.8-148.0-115.9 140.0 47.5 24.6 6.9
4 101 A Q E -A 21 0A 60 -2,-0.4 2,-0.4 17,-0.2 17,-0.2 -0.948 11.6-149.4-114.1 115.7 44.9 21.9 6.5
5 102 A I E -A 20 0A 0 15,-3.1 15,-2.8 -2,-0.6 50,-0.2 -0.704 20.9-116.4 -87.8 128.1 41.5 22.7 8.1
6 103 A T - 0 0 17 48,-3.0 13,-0.1 -2,-0.4 40,-0.1 -0.322 11.7-154.3 -64.4 140.8 39.4 19.9 9.4
7 104 A T - 0 0 1 2,-0.4 200,-0.3 39,-0.1 -1,-0.1 0.529 48.6-105.8 -88.9 -10.1 36.1 19.2 7.7
8 105 A G S S+ 0 0 9 1,-0.2 2,-0.5 198,-0.1 201,-0.3 0.196 97.2 94.5 101.9 -14.8 34.7 17.6 10.9
9 106 A S > - 0 0 0 199,-0.2 4,-2.6 1,-0.1 -2,-0.4 -0.951 61.4-156.7-114.9 124.2 35.0 14.1 9.4
10 107 A K H > S+ 0 0 153 -2,-0.5 4,-2.2 1,-0.2 -1,-0.1 0.904 98.4 47.9 -62.8 -42.3 38.1 11.9 10.0
11 108 A E H > S+ 0 0 90 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.895 113.1 46.7 -66.4 -41.5 37.5 10.0 6.8
12 109 A L H > S+ 0 0 1 2,-0.2 4,-1.8 1,-0.2 -2,-0.2 0.902 111.5 52.5 -68.1 -39.3 36.9 13.1 4.7
13 110 A D H <>S+ 0 0 23 -4,-2.6 5,-3.4 1,-0.2 6,-0.3 0.913 108.5 50.8 -61.1 -42.8 40.1 14.6 6.2
14 111 A K H ><5S+ 0 0 140 -4,-2.2 3,-1.8 1,-0.2 -1,-0.2 0.915 108.2 51.4 -61.3 -43.2 42.1 11.5 5.2
15 112 A L H 3<5S+ 0 0 31 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.853 111.2 49.1 -61.2 -34.4 40.8 11.7 1.7
16 113 A L T ><5S- 0 0 15 -4,-1.8 3,-1.1 -5,-0.1 -1,-0.3 0.210 118.2-113.9 -89.9 13.4 41.9 15.3 1.6
17 114 A Q T < 5S- 0 0 157 -3,-1.8 -3,-0.2 1,-0.3 -2,-0.1 0.811 92.9 -18.2 59.0 32.6 45.3 14.4 3.0
18 115 A G T 3 <S- 0 0 37 -5,-3.4 2,-0.3 -6,-0.1 -1,-0.3 -0.081 117.1 -71.2 132.9 -36.9 44.6 16.3 6.2
19 116 A G S < S- 0 0 3 -3,-1.1 2,-0.4 -6,-0.3 -13,-0.2 -0.957 84.5 -10.3 147.2-164.0 41.7 18.6 5.4
20 117 A I E S-A 5 0A 1 -15,-2.8 -15,-3.1 -2,-0.3 2,-0.4 -0.545 71.0-128.8 -72.0 125.3 40.9 21.7 3.4
21 118 A E E > -A 4 0A 59 -2,-0.4 3,-0.9 -17,-0.2 139,-0.4 -0.594 8.8-138.2 -83.6 127.4 44.1 23.3 2.2
22 119 A T T 3 S+ 0 0 8 -19,-2.4 137,-0.3 -2,-0.4 136,-0.2 -0.496 87.2 38.6 -76.2 150.6 45.0 27.0 2.7
23 120 A G T 3 S+ 0 0 26 135,-1.8 2,-0.3 1,-0.2 -1,-0.2 0.450 110.5 59.5 91.1 -0.5 46.5 28.7 -0.3
24 121 A S S < S- 0 0 2 -3,-0.9 136,-2.3 134,-0.2 2,-0.4 -0.919 83.5 -95.1-149.5 174.3 44.4 27.0 -3.0
25 122 A I E -b 160 0B 9 -2,-0.3 146,-2.4 134,-0.2 2,-0.5 -0.795 21.0-162.6-100.0 136.0 40.9 26.5 -4.2
26 123 A T E -bc 161 171B 2 134,-2.8 136,-2.5 -2,-0.4 2,-0.6 -0.988 13.5-161.8-114.8 118.5 38.7 23.5 -3.2
27 124 A E E -bc 162 172B 13 144,-3.0 146,-2.9 -2,-0.5 2,-0.5 -0.920 2.6-161.9-108.0 120.3 35.8 23.3 -5.6
28 125 A X E -bc 163 173B 0 134,-3.0 136,-2.5 -2,-0.6 2,-0.4 -0.889 2.6-154.7-108.5 125.8 32.8 21.1 -4.5
29 126 A F E + c 0 174B 42 144,-3.3 146,-2.6 -2,-0.5 2,-0.2 -0.814 44.0 83.6-100.8 135.6 30.2 19.8 -6.9
30 127 A G - 0 0 21 134,-1.8 134,-0.1 -2,-0.4 3,-0.1 -0.636 67.7 -89.6 149.1 153.7 26.7 19.0 -5.9
31 128 A E > - 0 0 150 -2,-0.2 3,-2.2 144,-0.2 5,-0.4 -0.318 64.3 -67.9 -81.1 168.1 23.2 20.4 -5.2
32 129 A F T 3 S+ 0 0 85 1,-0.3 -1,-0.2 2,-0.1 -2,-0.0 -0.304 124.8 30.0 -55.8 139.2 22.0 21.8 -1.9
33 130 A R T 3 S+ 0 0 178 -3,-0.1 -1,-0.3 1,-0.0 169,-0.1 0.201 88.2 98.8 92.3 -11.9 21.7 18.9 0.6
34 131 A T S < S- 0 0 22 -3,-2.2 142,-0.2 141,-0.1 150,-0.1 0.609 110.4 -96.8 -77.2 -10.7 24.5 16.8 -1.0
