Tool:VCF2PopTree: build a phylogenetic tree from a VCF file

Question

[sankar2004]

A phylogenetic tree can be constructed directly from a VCF file.

The simple software VCF2PopTree reads a VCF file and builds a tree in few minutes.

It also produces pairwise distance matrix from a VCF file, which can then be used as an input file for the popular software such as MEGA.

Software: https://github.com/sansubs/vcf2pop

Paper: VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SNPs. PeerJ, Vol.7, e8213; 2019

[hugo.avila]

Thanks ! This is exactly what i was looking for !