Secondary structure assignment tool.

Question

[user366312]

Is there any CA-based online tool/web-server available for secondary structure assignment of proteins except DSSP or STRIDE?

Answer 1

[Mensur Dlakic]

DSSP is considered a gold standard for this purpose, and STRIDE was popular as well at some point. I am pretty sure that you will encounter problems in some shape or form using other algorithms. But since you asked, here goes:

• http://prodata.swmed.edu/palsse/palsse.php
• https://lcb.infotech.monash.edu/sstweb2/Submission_page.html

Also, there are many secondary structure prediction programs.

[user366312]

I am looking for a CA-based tool.

[Mensur Dlakic]

The less you say when explaining your problem, the less useful feedback you get.

[user366312]

Yes, that was my mistake. I am sorry for that.