Cluster profiler enrichGO plots showing mt-DNA encoded enriched genes as grey in plots

Question

[Mia]

Hi all,

I am making plots of my enrichGO outputs and it seems that mitochondrial encoded enriched genes keep showing up as grey and are not following the fold change coloring scheme as the nuclear-encoded enriched genes. I am wondering if anyone else had run into this problem and if there is a way to make these genes appear with the colors indicating their fold change?

I have attached an example of a heat plot and cnet plot so you can see what I mean.