Extract repeat coordinates and sequences (soft masked repeats)
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3.5 years ago

Hello Community,

I have a soft masked reference genome file (reference.fasta) where repeats are in lowercase letters. I am looking for a way to extract the coordinates of repeats and probably sequences too. Is there any tool to extract repeat coordinates from fasta files (reference genome) where repeats are in lower cases?

Thanks in advance.

Repeat-extract • 575 views
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