Correlated PEER factors
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2.2 years ago

I have a voom normalized matrix of 3863 genes and 192 individuals. I ran PEER at n=50. I see PEER factors are all independent until n=35. After that pair-wise correlation of PEER factors are highly correlated. Could you please explain me in what conditions it can happen?
genomics cleaning data • 504 views
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Have you checked the elbow plot of variance explained by each PEER factor?

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