Detecting circRNAs from SE RNAseq data

Question

[Guruprasadh]

Dear forum,

Greetings! I have processed a SE RNAseq data file and got the output. I used these tools to arrive at the output (trimmomatic, bowtie2 for hg38, homer for quantification)

Now, I need to find out existing circRNA's from this output file. Is there a way?

Or It would be really helpful if anyone could suggest an easy-to-operate tool with a complete manual having step by step approach!!

Many thanks in advance, Best regards

Answer 1

[Trivas]

This paper seems like exactly what you're looking for: BMC Genomics

[Guruprasadh]

Thanks very much!