How to align/ blast vector sequence to human genome

Question

[Tonkatsu]

Does any one have any suggestions on how to do this properly?

Answer 1

[Jeremy]

You could align your vector to the human genome, but this would be a very long alignment. I would suggest using NCBI BLAST and entering Homo sapiens in the Organism field.

[Tonkatsu]

Thanks! So I just paste my sequence into nblast, change the organism to homo sapiens and then leave the rest of the parameters blank/default?

[Jeremy]

That's what I would do. Let me know how it works.