Comparing tpm/FKMP values form RNAseq with values from MS-Proteomics

Question

[Natan]

Hi there,

does anyone now if there is a way to quantitativly compare tpm/FKMP values form RNAseq with values from MS-Proteomics? I am using multiply databases, including PAX which uses MS to analyse the abundance of proteins in a given tissue, and GTEx which uses RNAseq and so gives me tpm/FKMP values to estimate expression of a given protein in a given tissue. Is there any (automated ?) way to compare these numbers?

Best regards

Natan