Entering edit mode
3.2 years ago
altos-squabs-0e
•
0
I'm interested in aligning sequences of integers not nucleic acids or amino acids such as:
[14,6,13,91,22,16,6]
and [1,1,2,10,4,11,92,22,17,05]
I've been experimenting with using the biopython pairwise library and trying to utilize it for my problem instead of DNA/protein alignment. However, I can't seem to figure out if this is possible given my alphabet of integers is infinite unlike DNA or amino acids.
Does anyone know of a package (preferably in python) to align sequences of integers? Ideally, I'm looking for this sort of output:
14 06 13 91 22 16 06
| | | | | | |
01 01 02 10 04 11 92 22 17 05
Any minimal working example would be fantastic.
I don't think this is a bioinformatics topic.