How do blastp step in MCScanX

Question

[carlosgonzalezcruz327]

Hi everyone, i am traying to run MCScanX program, i need get info about synteny between my 3 Fusarium species (scaffolds) and one Fusarium reference (chromosemes). I have installed the MCScanX program but i don't understand what file i need make a database for Blastp run. My reference file isn't in amino acids, only nucleotides. i read in the MCScanX manual i can use one GFF file in the blastp run, but really i dont know.

somebody can help me, please?

thanks in advance

[bioinfo223]

hi, have you find the solution?