Hello, I want to run "qp3Pop" (for F3 test) but, I got some error messages.
First, this is my par file
genotypename: HGDP_938_forf3.eigenstratgeno
snpname: HGDP_938_forf3.snp
indivname: HGDP_938_forf3.ind
popfilename: f3testlist.txt
And the errormessage says,
fatalx : fatal error (probably missing pop)
Aborted (core dumped)
Missing pop? I guessed that I wrote some mistakes with my popfile (f3testlist.txt), but it doesn't have any problem.
This is the log file
qp3Pop: parameter file: f3par
THE INPUT PARAMETERS
PARAMETER NAME: VALUE
genotypename: HGDP_938_forf3.eigenstratgeno
snpname: HGDP_938_forf3.snp
indivname: HGDP_938_forf3.ind
popfilename: f3testlist.txt
outgroupmode: YES
qp3Pop version: 650
number of triples 36
nplist: 36
snps: 153626
number of blocks for block jackknife: 549
pop: Yoruba
pop: Adygei
pop: Mozabite
it stopped here What would be the problem with my program?
Thanks!
