how to convert Impute2 result file to standard Plink files and how to filter above 0.9 of info number and how to handle?

Question

[dongxinyu510]

I don't know what to do with the data after impute, how to filter the loci leaving info values greater than 0.9?

[GiantSilverSoy]

I think to do research you should be able to find some tutorial and reference for your work. For example, this protocol could be a good place to get started: https://www.eva.mpg.de/documents/Nature/VanLeeuwen_Population_NatProt_2015_2366135.pdf

[dongxinyu510]

Thanks for your reply, I do need to read more literature