QTL scores values to predixcan/Fusion format
0
0
Entering edit mode
20 months ago
fernandogs97 ▴ 30

Hello, I am starting in the xWAS (PWAS, TWAS, MWAS) field, at first I have only been using the models published by predictdb (https://predictdb.org/) on my patients summary data with predixcan (https://github.com/hakyimlab/PrediXcan). Despite this, I am trying to use more available information, for this purpose, I want to use QTL score information (for example: https://www.omicspred.org) to create models in the predixcan format so I can apply them to my data. The main problem is that I do not find information about how to use the QTL score information published by multiple authors. I would be very grateful if someone could give me some advice on this area

TWAS PWAS QTL PREDIXCAN GWAS • 595 views
ADD COMMENT
1
Entering edit mode

You can get support from PrediXcan's devs group. Check this out https://groups.google.com/g/predixcanmetaxcan.

ADD REPLY
0
Entering edit mode

Thank you, I have already posted my question, either way I'll keep this post open in case someone shares its experience with me.

ADD REPLY

Login before adding your answer.

Traffic: 1700 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6