Entering edit mode
3.0 years ago
raghuramdr
•
0
I am trying to download all the genomes corresponding to the genome ID of a bacteria from BV-BRC using the CLI. I first tried downloading from the FTP, but keep getting an error due to the connection timing out. I was wondering if there is an alternative way to do this. For e..g, using p3 scripts.
Something link
p3-extract < "input.tbl" | p3-get-genome-data --attr "fasta_file.fa"
where "input.tbl" and "fasta_file.fa" are the input file containing the genome IDs and the corresponding genome in a fasta file format.
