What tools I can use to manually curate my scaffolded genome assembly?

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2.3 years ago

breadyuto • 0

Hi,

I am new to genome assemblies and I am now trying to manually curate my assembly to chromosome-level assembly. I have a scaffolded assembly with about ~300 scaffolds, and would like to join and break some scaffolds and arrange it to 23 chromosomes. What can I do to do this?

I have aligned my scaffolds to a reference genome to see which scaffolds are in which chromosomes however I do not have an idea how I can arrange my scaffold, assign them to a chromosome number and combine them, and make it into chromosome-level assembly. Can you please give me some idea how to do it?

Thanks!

assembly genome scaffolding chromosome-level • 595 views

ADD COMMENT • link updated 18 months ago by genomics_buddy • 0 • written 2.3 years ago by breadyuto • 0

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Do you got your answers? Is your reference genome is in complete level?

ADD REPLY • link 18 months ago by genomics_buddy • 0

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