How to get Protein names and their ID for a given list of peptide sequence (using Python)
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18 months ago
Mathew • 0

I have a list of peptide sequence, I want to find which protein belongs to it. Using any Open Database like Uniprot, i.e., peptides belonging to the proteins. can someone help how to find the protein names and ID, thanks in advance.

protein peptide uniprot • 397 views
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Maybe using blastp through Bio.Blast.Applications? Something like:

Ncbiblastpcommandline(query='input.fasta', db='database', outfmt=5, out='output.xml', remote=True)
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