Tools for super-enhancers prediction

Question

[gerlumen]

Hello! Dear colleagues, could you suggest tools which are commonly (or rarely) used for prediction of super-enhancers except well-known ROSE-algorithm? Recently i've read about CNN-based methods. Are these robust?

Answer 1

[DBScan]

I've used LILY (from the BoevaLab) in the past, which is based on ROSE.