Entering edit mode
15 months ago
Aswr
•
0
Hi, I've converted the reich dataset to plunk format along with my vcf file provided from my full genome, I merged the both together which led to getting an error and output two files. The two files it output was .fam and .missnp, now it tried flipping .missnp with my genome but it keeps saying duplicate ID any idea how I can fix this?
My second question is I provided a .txt file with my cram and tried to convert it to plink while it provides the two other files, I get an error saying chromosomes not in order and it never provides the .fam file, which is why I had to use my vcf file instead. Any idea how I can also fix this thanks
"The two files it output was .fam and .missnp, now it tried flipping .missnp with my genome but it keeps saying duplicate ID any idea how I can fix this?"
I also have this problem. Can anyone help?