How can I plot the heatmap with the fold changes of ChIP-seq occupancy levels of 2 samples using `deepTools`?

Question

[Dan]

Hello,

How can I plot the heatmap with the fold changes of ChIP-seq occupancy levels of 2 samples using deepTools?

Thanks a lot.

Answer 1

[Trivas]

I'd look at wiggletools to "normalize" your bigwig files prior to plotting the heatmap with deeptools