CABSDock issue:DSSP not found

Question

[Farha]

I am a beginner and have installed CABSDock first time when i tried to run a command:

CABSdock -i ~/attachments/adeA.pdb -p GKPKKIGKKICRIGQPTRIATIQAIGCAQQAAKKAATPKG --image-file-format png --save-config --contact-maps it gave me the following error:

[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:10) [WARNING] JOB: /home/farah already exists. Output data will be overwritten. (00:00:10) [INFO] Protein: Loading /home/farah/attachments/adeA.pdb as input protein (00:00:10) [WARNING] PDB: DSSP not found. (00:00:12)

but done simulation successfuly.

I have installed dssp from conda by using this command "conda install -c salilab dssp" PLease help me in this.

Answer 1

[Mensur Dlakic]

A similar question was asked a couple of weeks ago here. It helps to search through this site before posting.

In your case most likely you need to point out directly the location of DSSP. There is a location in that post from which dssp can be downloaded.

[Farha]

Thankyou for your help. Thw issue is resolved now